Lactuca sativa (garden lettuce): 111901616
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Entry
111901616 CDS
T05352
Name
(RefSeq) structural maintenance of chromosomes protein 6B
KO
K22804
structural maintenance of chromosomes protein 6
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111901616
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
111901616
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_13
Crescentin
AAA_15
AAA_29
SbcC_Walker_B
AAA_21
SMC_hinge
ABC_tran
Motif
Other DBs
NCBI-GeneID:
111901616
NCBI-ProteinID:
XP_023753259
LinkDB
All DBs
Position
9:67936556..67943061
Genome browser
AA seq
1057 aa
AA seq
DB search
MADARVINGPAGALQAGIITKIRLENFMCHTHMEIDIGDRVNFITGQNGSGKSAILTALC
IAFGCRAKSTDRATTLKEFIKTGCSYALVHLEIKNQGEDAFKHGIFGDVIILERRITEST
STSVLKDQQGKKVATRKEDIRELVEHFNIDVENPCVVMSQDKSREFLHSGNDKDKFKFFF
KATLLSQVDDLLKSVKDNLDKANSEVVELERSIAPIEKELNELQGKIKSMEHIEEISQKV
QLLTKKCAWSLVYDIDKQIQEETARIKKFEERIPQCQARIDQQIAKVADLQDCLDKKKAQ
SAVMMESTSKARKRKSELEQKLSLATKERIELEQEYGRRRNNVAKMAKRIKLLEQQINDV
SEQHMKDTQAEEHEMENKLKELQEEINVAESDCLRLKNIEDDLSERLAIARDELKEITSE
IDEYEKKISDSQRRIRDLRLNQTNKVTAFGGYKVTSLLKAIERNHHKFKKPPIGPLGAHV
ALLHGDKWAVAVENAVGKLLNAFIVTDHKDSLLLRSCAREANYHHLQIIIYDFSIPRLQI
PNHMLPQTNHPTAISVMQSDSPTVVNVLVDVGGAERQVLVRDYDMGKTIAFDQRIPNLKE
VYTLEGQRMFSRGSAQTTLPPNKNARSGRLCSSYDDQIKIYEREAIHMQEEAKQIRGKKR
TFEERVKNLQDEFQNAKRQRMNSEKCVMSKNLGLKDLKNSLAAEAEAAASSVSNVDELHQ
EVSKLQNDKNQFEMSLEKIQERLQEAEAKANELKVSFEELCESAKADISALDKATGELTQ
IEEDLRAAEAEKRHYEGLMQQKVHKGIETAKQNYKALESERKASYEKASIICPESEIESL
GGCDDTSSDQLQAHLTRLKQRLQQESQRHQESIDELRMMHDKKQRKIIKQQKTYKAFRDK
LSAIHTALDKRWSKFQRNATLLKRQLTWQFNGHLRKKGISGLIKVSYEEQKLSIEVKMPQ
DATSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTIV
DFALAQGSQWIFITPHDISMVKHDERIKKQQMAAPRS
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgctagggttatcaatggacccgccggggctttgcaagcaggcatcatcacc
aaaatccgattagagaacttcatgtgccatactcatatggaaattgatattggcgaccgt
gttaatttcatcactggacaaaacggaagtggaaagagtgcgatacttacggctttgtgt
attgcttttggatgtcgagcaaaaagtacagacagggcaacgacattgaaggagtttata
aagactggttgcagctacgcccttgttcatttggaaataaaaaatcagggagaggatgct
tttaagcatggcatttttggagatgttataatattagagcgcaggattactgaatcaacc
agtaccagcgtccttaaagatcaacaagggaaaaaagtagctacccggaaagaagacatc
cgtgagcttgtggaacattttaacattgatgttgaaaatccttgtgtggtgatgagccag
gacaagagccgagagtttttgcattcagggaatgacaaagataaattcaagttctttttc
aaggctacacttttaagtcaagtggatgatctactgaaaagtgttaaagacaatcttgac
aaggcaaatagtgaggttgttgagttggaaaggtcaatagcacctatagaaaaggaattg
aatgaattacaaggaaagattaaaagcatggaacatattgaagaaatttcacagaaggtt
cagttgttgaccaaaaaatgtgcatggtcactggtatatgacatagataaacaaatccaa
gaagaaactgcaaggattaaaaaatttgaagagagaatacctcagtgtcaagctcgaatt
gatcaacaaattgcaaaagtagcagacttgcaggattgtttagacaaaaagaaagctcaa
agtgcagttatgatggaaagtacttcaaaagctaggaaaaggaagagtgaattagagcag
aaactatctttggctaccaaggagaggattgagctagagcaagaatatggcagaagaagg
aacaatgttgctaaaatggctaaacggatcaagttacttgagcaacaaatcaatgatgtc
agtgaacaacatatgaaagacacacaggctgaagaacatgagatggagaataaactaaag
gagcttcaagaagagatcaatgttgctgagtcagattgcctaagattgaagaatattgag
gatgatttatcagaaagattagcgattgcaagagatgagcttaaagagatcacttctgag
attgatgagtatgaaaagaagataagtgatagtcaacgccgaattcgtgacctacgcctg
aatcagacaaacaaggtgacagcttttggaggatacaaagttaccagtcttttaaaagct
attgagaggaaccaccacaagttcaaaaagcctcccattggtcctttaggagcacatgtg
gcattactccatggtgacaaatgggctgttgctgttgaaaatgctgttggaaaattactg
aatgctttcatagtaacagatcataaagattctcttttattaagatcatgtgctagagaa
gcaaactaccaccaccttcaaatcattatctatgatttttctataccaagattacaaatt
ccaaatcacatgcttcctcaaacaaatcatccaactgctatttcagtaatgcaatccgat
agtccaacagtagtcaatgtattggtggatgtgggtggggctgagagacaggtgcttgta
agagactatgatatgggaaaaacgattgcttttgatcaaaggattccaaatttgaaggag
gtttatacgttagagggtcagaggatgttttctcgtggttcagcacagacgactttaccc
ccgaataagaatgcaaggagtgggcgtctttgtagttcatatgatgatcaaattaaaatt
tatgaaagagaagcaatccacatgcaagaagaagctaaacaaatccggggaaagaaaagg
acttttgaagaacgggttaagaatcttcaagatgaatttcaaaatgcaaaaagacaacgg
atgaattcagagaagtgtgtaatgagcaagaatcttggactaaaagatttgaagaattca
cttgctgcagaagcagaagcagcagcttcatccgtatctaatgttgatgagctccatcaa
gaagtttcgaaattacaaaacgataaaaaccaatttgagatgtcacttgagaagattcag
gagagattgcaggaagccgaagccaaagcaaatgaactcaaagtatcattcgaagagctt
tgtgaatcggcaaaagctgacatcagcgctcttgacaaagcaacgggtgagttgactcag
atcgaggaggatttacgtgctgctgaagcggaaaaacgtcattatgaagggcttatgcag
cagaaggtccataaaggaattgaaaccgcaaaacaaaattataaggctttggaaagcgag
cgaaaggcgagttatgagaaagcttcaatcatatgccctgagagtgaaattgagagttta
ggaggatgtgatgacacaagttctgatcaactccaagcccatctcacaaggcttaaacag
aggcttcaacaggaaagccaaagacatcaggaatccattgatgagcttcgaatgatgcat
gataaaaaacaaagaaagattatcaaacaacagaaaacttacaaagcttttagagacaaa
ctttctgcaattcatacggctcttgacaaacgatggagcaagtttcagaggaatgccact
cttttaaagagacagctgacgtggcaatttaatgggcatctgagaaagaaggggatcagt
gggctcattaaagttagttatgaggagcagaagctttcaatagaggttaagatgccccaa
gatgcaactagcagcaatgttcgcgacactagagggctttcaggaggagagcgatcgttc
tcaacactatgttttgcacttgcacttcatgagatgacagaagctccatttcgagctatg
gatgagtttgatgtctttatggatgctgtgagtaggaaaataagcttggacacgattgtg
gattttgctttggcgcaaggatcacagtggatatttattacacctcatgatataagcatg
gtaaaacatgatgagaggataaagaagcaacaaatggcagctcctcgctcataa
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