KEGG   Lactuca sativa (garden lettuce): 111901721
Entry
111901721         CDS       T05352                                 
Name
(RefSeq) WD repeat-containing protein RUP2
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv04120  Ubiquitin mediated proteolysis
lsv04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    111901721
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    111901721
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lsv04121]
    111901721
Enzymes [BR:lsv01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     111901721
Ubiquitin system [BR:lsv04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    111901721
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     111901721
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 Beta-prop_EML_2 WD40_Prp19 Beta-prop_TEP1_2nd WDR55 WD40_WDHD1_1st Beta-prop_EIPR1 EIF3I Beta-prop_EML WD40_like Beta-prop_DCAF12 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_RIG_2nd Beta-prop_SPT8 DUF5689
Other DBs
NCBI-GeneID: 111901721
NCBI-ProteinID: XP_023753372
LinkDB
Position
9:73507284..73508742
AA seq 372 aa
MKNVSFQSEQTHPNPPPLDPDQEDRSTSATKFEWDFSVSAVVSSSVAGGNISDTLGVVEV
NSSGNLFATGGIARKIRVYSLNSLLSSSSLEATLFDHATACHYCICTPAKLSSLKWKPGS
GSQVMGSADYDGVVTEYDLETKMPVYERDEHSGRRVWSMDYSHWDPVVGASGADDGTMQM
WDPRHDGGKCVAKVVLGSPVCCVEFNPFGGALVAVGCADRKAYVYDVRKIVDPVAVFDGH
QRTVSYTRFLDDHTVVTSGTDGCLKMWDIEKQHMIRTYKGHTNQRRFVGLSIWRNQGLIG
CGSESNQLFVYDKRWGEPIWVHGFEPEGGRRYEDGFVSSICWSQEGEDECTLVGGGSDGV
VKIFSGKRKPLT
NT seq 1119 nt   +upstreamnt  +downstreamnt
atgaaaaacgtctcatttcaatcagaacaaacccatccaaacccaccaccactagatccc
gatcaagaggatagatcgacgtcagcgacgaagtttgagtgggatttttccgtctccgcc
gtggtttcatcctccgttgccggtggaaacatctcggacactctcggcgtcgtagaggtt
aactcctccggaaatctctttgccaccggcggtatagctaggaagatcagagtttatagc
ttgaattcattgctatcatcaagtagtctagaggcaacattgtttgaccatgctactgca
tgccattattgcatatgtaccccagcaaaactcagcagcctcaaatggaaacccggctcc
ggaagccaggtcatgggatcagccgactacgacggtgttgtcacggagtacgatcttgag
accaagatgccggtttacgagcgtgacgaacacagcggccggcgggtttggagcatggac
tactcccactgggatccggtggtcggagcatccggtgccgatgacggaaccatgcaaatg
tgggacccgcggcatgatggtgggaaatgtgtggctaaagtggtgttagggagcccagtt
tgttgtgtggagttcaacccgtttggtggcgcattggtagccgttggatgtgcagatcga
aaagcctacgtttacgatgtgaggaaaatcgttgacccggtagcggtgtttgatgggcat
cagaggacggtaagttacacgagattcctggatgatcacacggtggtgacgtccggcaca
gatgggtgtttgaagatgtgggacatagagaagcaacacatgattcgcacgtataaaggg
cacacaaaccaaagaaggtttgtgggattatccatttggagaaatcaaggattgattgga
tgtgggtctgagagcaaccagttgtttgtatatgataagaggtggggtgaacccatatgg
gtgcatgggttcgaaccagagggtggaagaaggtatgaagatgggttcgtgagtagcata
tgttggagccaagagggtgaagatgagtgcacgttggtgggtggtggttccgatggagtt
gtaaagattttttccggaaaaagaaaaccgttaacttaa

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