KEGG   Lactuca sativa (garden lettuce): 111901854
Entry
111901854         CDS       T05352                                 
Name
(RefSeq) splicing factor U2af large subunit B isoform X1
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111901854
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lsv03041]
    111901854
Spliceosome [BR:lsv03041]
 Complex A
  U2 snRNP components
   U2 related factors
    111901854
 Complex B
    111901854
SSDB
Motif
Pfam: RRM_1 RRM_occluded RRM_7
Other DBs
NCBI-GeneID: 111901854
NCBI-ProteinID: XP_023753481
LinkDB
Position
4:328406437..328411414
AA seq 576 aa
MTDYEERYEGNGEDVETFGGGSSPQARANSHGGGPDDFSDSKSQRSSRDYERESSKSRSK
DRERGREKDRERDRDRDKDREKSKDRDRDRERDKDRDRHRDRYRERSERRERGRDRDDDD
YHRSRDYDRRRDYDRDREDRHSRRRSRSHSRAKSEHRSRSRSRSRSKSSKRVSGFDMAPP
ASALLAGAAAVTAGQIPGATPTIPGMFQNMFPLAAGQFGALPVMPVQAMTQQATRHARRV
YVGGLSPTANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASN
AMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRI
FVGGLPYYFTEAQVRELLESFGALRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALN
GIKMGDKTLTVRRANQGQTQPKPEQESVLLHAQQQIALQRMMLQPPPSIGTTATKVLCLT
QVVNEDELKDDEDYQDILEDMKIECGKFGSLVNVVIPRPNPTGEPAPGVGKVFLEYADVE
SAAKARGGLNGRKFGGNQVVAIFYPENKFNQGDYEG
NT seq 1731 nt   +upstreamnt  +downstreamnt
atgacggattacgaagaaagatacgagggtaacggtgaagatgttgaaacttttggcggc
ggctcctcgcctcaggctagagctaacagccacggcggcggccccgatgatttcagcgat
tctaagtcacagcgtagctctcgtgactatgaaagagagtcctcaaaaagcagatcaaaa
gacagggaaagagggcgtgaaaaggacagagaaagggatagagacagagacaaagatagg
gaaaaaagcaaagacagggacagggatagggagcgagacaaagatcgtgatagacacagg
gatcgttatagagaaagaagtgagagaagagaaagaggtagagatagagatgatgatgat
tatcacagaagtcgagattatgacagaaggagagattatgacagagatagagaagataga
catagtagacgcaggtctcgttctcactcaagagccaaatctgaacatagatcaaggtcg
aggtctcgttcaagatccaaaagcagcaaaagagttagtggatttgacatggcacctcca
gcttctgcacttttggctggtgctgcagctgttactgcaggtcagatccctggggccacc
cccacaattcctggaatgttccagaatatgttccctttggcagctggtcagtttggagct
cttcctgttatgccagttcaagcaatgactcagcaggccactagacatgcaaggagggtt
tatgttggtgggctttctccaactgctaatgaacagtctgtggcaaccttttttagccat
gtgatgtcagcaattggtggaaatactgctggtccaggtgatgctgttgtgaatgtgtac
attaatcatgaaaagaagtttgcatttgtggaaatgagatctgttgaggaagccagtaat
gcaatggctttagatggcattatattcgagggagcaccagtaaaggtgagaagaccaagt
gactacaacccttcactagcagcaaccctgggtccaagtcaacctaacccgaacctgaac
cttggtgcggtgggtctaacccccggttcagccggtggactcgagggtccagaccgcata
tttgtaggagggctgccttattacttcacagaagcacaagtgagggaactgctagagtct
tttggtgctcttagaggatttgatcttgtgaaagatagagaaactggaaactcaaaagga
tacgcgttctgtgtttatcaggacttatctgttacagacattgcttgtgcagctcttaat
gggatcaaaatgggtgacaagacacttacagttagacgcgctaaccaaggtcaaacccaa
cctaaacctgaacaggagagcgtgcttttacatgcacagcaacaaattgcattgcagagg
atgatgttgcaaccacctccctccattgggacaactgctactaaagttctatgtttaaca
caagtggtgaatgaagatgaacttaaagatgatgaagattatcaagatatattggaagac
atgaaaatagaatgtggaaaattcggtagtttagtgaatgttgtaattccacgccctaac
cctactggagaaccagcaccaggtgttggaaaggtgtttttggagtatgctgatgtggaa
agtgcagcgaaagcaaggggagggttgaatggaaggaaatttggagggaatcaagtggtg
gcgatattttatccagagaataagttcaaccagggagactatgaaggataa

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