Lactuca sativa (garden lettuce): 111902661
Help
Entry
111902661 CDS
T05352
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111902661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111902661
03036 Chromosome and associated proteins [BR:
lsv03036
]
111902661
Transcription machinery [BR:
lsv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
111902661
Coactivators
SAGA/TFTC/STAGA complex
111902661
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
111902661
STAGA complex
111902661
TFTC complex
111902661
SAGA complex
111902661
SLIK complex
111902661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_IP5PC_F
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_DCAF12
RAB3GAP2_N
LisH
WD40_like
Cytochrom_D1
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
111902661
NCBI-ProteinID:
XP_052621310
LinkDB
All DBs
Position
7:5128261..5132998
Genome browser
AA seq
693 aa
AA seq
DB search
MDEEVLDKAVYLYLKKKGFTQTEQIFQQEQQNKNKNSSSSVTATDVSLSDPDLAKQILVF
SQSESIPTLYHDGYSKLRSWTYSSLDLYKHELLRVLYPVFIHCFMDLIAKGHLQEARAFF
NTFREDHEMMHSRDLTKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYSYDLLLQYLHKT
QSITMLGIINEHIDFQVSPGQPSSISDDAEAFSLVGSGQDAANLINQKEIHWGVSKLLED
CLEDRLDKAGGLLSDSEKTEGEGKEGELDENKKKSADGGKQGGPLKKLKKDKVVGGAGKA
ARGEGDKSTAAPRVKPELTLPTISTDVEHSILEDLRNRVQLNNSTLPSVSFYTFINTHNG
LNCSSISHDGSLVAGGFSDSSLKVWDMAKLGRMGSSGENDSDGSNGGKRSYTLYQGHSGP
VYSASFSPFGDFLLSSSSDSTIRLWSTKLNANVVCYKGHNYPVWDVQVEFEWNNIKLNLC
GNYFTQLLYMQFSPLGHYFASASHDRTARIWSMDRIQPLRILAGHLSDVDCVEWHMNCNY
VATGSSDKTVRLWDVQSGECIRIFIGHRSMILSLAMSPDGRYMASGDEDGSIMMWDVSNG
RCVTPLVGHTSCVWSLAFSCEGSLLASGSADSTVKLWDVNTSAKTPKNEDNKSGNTNRLR
SLKTLPTKSTPVYALRFSRRNLLFAAGALSTNV
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaagtgttggataaagctgtatatttgtatttaaagaaaaagggattcacc
caaactgaacagatttttcaacaagaacagcagaacaagaacaagaactccagctcatct
gttactgctaccgatgtttccctttcagacccagatcttgctaaacaaatccttgtgttt
tcccagtcagaaagtatcccaacactataccatgatggatacagcaagttgaggtcatgg
acttatagctcactagatttatataagcatgaattgcttcgtgttctctacccagtattt
atccactgtttcatggatctcatagcaaaaggccatcttcaagaagctcgagcattcttc
aatacctttcgtgaagatcatgagatgatgcattcacgtgatctcacaaaattagaaggt
gttctttccccatctcatttagaggaaatggagtttgctcacactctaaggcagagcaaa
gtgaatataaagatatgccagtattcttatgatcttcttctgcaatatctacacaagaca
caatccattacaatgcttggtattatcaatgagcatattgacttccaagtttctcctgga
caacctagctcaatttctgatgatgctgaagccttttcacttgttggaagtggacaagat
gctgctaatttaataaatcagaaagaaatacattggggggttagtaaattgcttgaagat
tgtttagaagatcggcttgataaagcaggtgggttgctctcagattcagaaaagacagaa
ggagaaggcaaagaaggagagttagatgagaataagaaaaaatcagcagatggtggaaag
caaggtgggcccctcaagaagctaaagaaggacaaggttgttggtggggcagggaaagct
gcccgaggggagggtgacaagtcaactgctgccccacgagtcaaacccgagcttactttg
ccaacaatatcaacagatgtagaacattctattcttgaagaccttagaaaccgtgtacaa
ttaaacaattccacacttccttcagttagtttctacacattcattaatacacataacgga
ttaaattgttcatcaatatcccatgatggatcattagtagctggaggattctcagattca
tcactcaaggtgtgggacatggcaaaacttgggcgtatggggagttctggtgaaaatgat
tcggatggatcaaatggtggaaaaaggtcttacactttgtatcaggggcattctggtccg
gtttattcagcttcatttagtccttttggggattttcttttatcatcatcgtcagattca
acaattcgattatggagcacaaagttgaatgcaaatgttgtgtgctacaagggtcataat
taccctgtatgggatgttcaggtagaatttgaatggaataatattaaattaaatttatgt
ggtaattattttactcaattattgtatatgcagtttagtccacttggacactattttgca
agtgcatctcatgatagaacagctaggatttggtcaatggatagaattcagcctctaaga
atacttgcaggacacttatctgatgttgattgtgtagaatggcatatgaactgcaattat
gttgcaacgggatcaagtgacaaaacagttcgtttatgggatgtacaaagtggtgaatgc
atacggattttcattggtcataggagtatgatattatcattagccatgtcacctgatggt
agatacatggcatctggtgatgaagatggaagtataatgatgtgggatgtttccaatggt
cgatgtgtcactcctcttgtgggccatacttcatgtgtctggtctcttgctttcagttgt
gagggatcccttcttgcatctggttccgctgattcaactgttaaattatgggacgttaac
acaagtgcaaaaacgccgaaaaatgaagacaataaaagtggaaatacaaatagactgaga
tcactcaagactctacctaccaaatccacccctgtttatgctttacggttttcgcgaagg
aatcttctttttgctgctggggctctttctacaaatgtgtaa
DBGET
integrated database retrieval system
