Lactuca sativa (garden lettuce): 111902997
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Entry
111902997 CDS
T05352
Name
(RefSeq) endoribonuclease Dicer homolog 2
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsv03036
]
111902997
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111902997
microRNA pathway
RISC loading complex
111902997
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
ResIII
Dicer_dimer
Helicase_C
PAZ
SWI2_SNF2
SNF2-rel_dom
Cas3-like_C_2
AAA_22
dsrm
Motif
Other DBs
NCBI-GeneID:
111902997
NCBI-ProteinID:
XP_042754607
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All DBs
Position
9:62117070..62143578
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AA seq
1400 aa
AA seq
DB search
MVVINGESETSADQLPFARSYQIEALEQAIKQNTIVFLETGSGKTLIAIMLLRHYAYLLQ
KPSPFIAVFLVPTVVLVKQQADSVRKHVDLKVEEYWGEKVVDLLNIAAYWKKQQDENQLL
VMTPQILLNALNRSFLSLDNIKLLIFDECHRAKKKYEYALIMKEFYHPRLCDGGSQLPRI
LGMTASPVEAKVSSSPKDYWEQMNKLETMLNSKVYTCSSESVLSDYIPVSTVKIKFYKNM
APPYHVLEELKNTLSILRQKHESKVSISSTLSESSRQNAIKRLSILYSTFEFCLDELGIF
LASKAAEAYSCDKNDMFLWGQLDLRGENISREFCKDANKVFCSYIPNEWSITQVNEATVS
IGLLSTKVACLIESLAEYRDVKEMRCLIFVERVVTARVLKSLLSELHSKLFDWKTEYVAG
NNALMQSQSRGVQNKIVDEFHKGIVNIIVATSILEEGLDVQKCNLVIRFDPASTVCSFIQ
SRGRARMQNSDFLLLVKSGDDDTLNKVNNYLLSGKIMRDESLSHASEPCGPLEKDLYDEV
VYHVESTGATLRLSSSISMVYFYCSRLPSDGYFKPYPRFVIDKELKTCTIYFPKSCPLPS
VHVSGPTKMLKQLACFEACKQLHAMGALTDNLIPDTLKKSADDEQETGIKYVEEQVQYIP
PELVGFGDNSSKLYHFYTINLEKHFDYNIPLQDIVLAVSTKLEFDNEGLTFDLEADRGDI
SVSLTYIGTCKLTSEQITLTNQFQMVVLTLLIHRSISKLKTCVDSFKLKNDADMAYDYLL
LPSAGPHKAPMIVEWKAVKAAMFSYERGVDERMCCLKGNNHEKVHTKSGLVCSCLVDNSL
VYTPHNGRIYCTTERLLGLNGNSTLEIKEGEVVTYKNHYKRRHGVDLMFEKEPLFAARQL
FTVQNFLQKGRQQKEKETSNAGVELPSELCDIIMSPVSISTIYSFSFVPSIMHRIESWMI
ALNLKKMHLCHSMPNADVPVIKVLEAITTKKCVEKFHLESFETLGDSFLKYAATQQLFKT
LQDQHEGILSPKREKIISNDSLCRLGCNCNLPGFIRNEPFEPKTWIVPGDRSSSFKLEEE
VLLDERKMYIRGKRVIKKKVVADVVEALIGVFLSEGGELAALSFMRWIGISVDFVNTPYT
RALTLHPEKYVNIQYFESLLNYSFRDVSLLVEAITHGSYMLPEIPKCYQRLEFLGDAVLD
YMITVHLYNKYPGMSPGMLTDLRSASVNNDCYAQSAVKYELHKHILHGSQDLHRAIVTTV
HEFDQLSMKSTFGWESETSFPKVLGDVIESIAGAILVDSGYDKDKVFQSIRPLLDPLVTP
ETLKLHPVKELHDICQKNHFEMKKSAKRGTTDDGTISFTIEIVKDNIVLKDSCMAADKKM
AERLASKSVLKLLKEYLSAA
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atggttgtgattaatggtgaaagtgaaacatctgccgatcaacttccgttcgcaagaagt
tatcagatagaagctctggagcaagcaataaaacagaacacaatagtgttcttggagact
ggatcaggcaaaacattaattgctattatgcttctacgccactatgcttacctgttgcaa
aaaccatcacctttcattgcagtttttttggtacccactgttgtattagtcaaacagcaa
gctgatagtgttagaaaacatgttgatctgaaagtggaagaatactggggggaaaaagtt
gttgatcttttgaatattgctgcttattggaagaagcaacaagatgaaaaccagctactg
gtgatgacacctcaaattttacttaatgctttgaaccgtagttttttaagcttggataac
atcaagcttctgatatttgatgaatgtcatcgtgcaaagaaaaaatatgagtatgctctt
attatgaaggagttttatcacccccggttatgtgatggtggttctcagcttcctaggata
cttgggatgacagcttcacctgtggaagctaaagtgtcaagctcacccaaggattattgg
gaacagatgaacaaacttgagactatgttgaattcaaaggtgtatacgtgctcaagtgaa
tctgtgttatctgactacattcccgtttctactgttaagattaagttttacaaaaacatg
gcacctccttaccatgttcttgaggagttaaaaaacactctttcaattttaagacaaaag
catgaatcaaaagtcagtataagttcaaccctctcagaatcttcaaggcaaaatgccatt
aaaagattgtccattttgtattcaacttttgaattttgcttagacgaattgggcattttc
ttggcttcaaaggcagcggaagcatattcatgcgacaaaaatgacatgtttttatggggg
caactggatttacgtggagaaaatatatccagggaattttgcaaagatgccaacaaagtt
ttttgctcatacatacctaatgagtggtcaatcactcaagtcaacgaagcaactgtgagc
attgggttgctctcaacaaaagtcgcctgtttaatcgaatctcttgctgaatatagggat
gtgaaggaaatgagatgtttaatctttgttgagagggtagtaacagcaagggtactaaaa
agcttactgagtgaattgcactctaaactttttgactggaaaacagaatatgtagctggg
aataatgctcttatgcagtcacaaagtcggggtgtacaaaacaaaatagtggatgagttc
cataaaggaatcgtaaatatcattgtggcaacatcaattcttgaagaaggcttggatgta
caaaaatgcaatcttgtaataagatttgatcctgcatctactgtttgcagttttattcag
tctcgaggtcgtgctcgaatgcagaactctgattttcttttactggttaaaagtggggat
gatgatacgctgaataaggtgaataattaccttctgagtggaaagatcatgcgggatgag
tctttgagccatgcttctgaaccatgtgggccccttgaaaaagacttgtatgatgaagtg
gtgtatcatgttgaatccacaggagcgactttaagattgagttcgagtatttccatggtt
tatttctattgttccaggctaccttctgatgggtattttaaaccttacccaagattcgtg
attgacaaagaattaaaaacttgcactatctattttcctaaaagctgcccacttccaagc
gtgcatgtttcgggccccacaaaaatgctgaagcaacttgcatgttttgaagcatgtaag
cagttgcatgcaatgggcgcactaacggacaatcttatccctgatacattgaaaaaatca
gctgatgatgaacaagaaaccggaatcaagtatgtcgaagaacaagttcaatacatacca
ccagagcttgttggatttggagataattcatctaagttatatcatttttacacgatcaat
ttagaaaaacactttgattacaacattccactacaagatattgttcttgcagtaagcaca
aagttagagtttgacaatgaagggttgacctttgatcttgaagcggatagaggagacatt
tctgtttctttgacttatattggaacgtgtaagcttacttctgaacagataacgttaacg
aatcagttccaaatggtggtgttgacactacttattcaccggtcaatttccaagttgaaa
acgtgtgttgattcgtttaaattaaaaaatgatgctgacatggcgtacgactatctgtta
ctcccgtcagcgggcccacataaagctccaatgattgtggagtggaaggctgttaaggct
gctatgttctcatatgaaagaggtgtagacgaacgtatgtgttgtttaaagggaaataat
catgaaaaagtgcacacaaaaagtggattagtatgtagttgtttagtggataattcttta
gtgtatacccctcataatgggcgcatatattgcactactgaaagattacttggtttgaat
ggcaattcgaccttggaaataaaagaaggggaagttgttacctataaaaatcactacaaa
agacgacatggagttgacttgatgttcgaaaaagaaccgctttttgctgctagacaactt
tttacggttcaaaattttcttcaaaaagggagacaacaaaaggaaaaagaaacaagtaat
gcaggagttgagctgccatctgaactatgtgacatcatcatgtctcctgtttctataagc
acaatttattctttctcctttgttccatcaatcatgcacaggatcgagtcgtggatgatt
gctttgaatttgaaaaagatgcatttatgtcatagtatgccaaatgcagatgttcctgtc
attaaggttttggaagctatcacaacaaagaaatgtgtagaaaagtttcatctggaatcc
tttgagactctaggcgattcttttcttaagtatgctgctactcaacagttattcaaaaca
cttcaagatcaacacgagggaattttgagtccaaaaagggagaaaattatatccaatgac
tcgttatgcagattgggatgtaactgtaatcttccggggtttatccgtaacgagccattc
gagccaaaaacatggattgtccccggagatcgttctagcagctttaaattggaagaagag
gttctattggatgaaagaaaaatgtatatcaggggcaaaagggtaataaaaaagaaagta
gtggcggatgttgtggaagcattaattggtgtttttctaagcgaaggaggtgagctggca
gcgttatcttttatgagatggatcggtatatcggttgactttgtcaacacgccatataca
cgagctttgactttgcatccagaaaaatatgtaaacattcagtactttgagtcgttgcta
aattactcatttagagacgtatctttacttgttgaagcaataactcatgggtcctacatg
ctacccgaaattccaaaatgttaccagagattagaatttcttggggatgcagtgttggat
tatatgatcacagtgcatttgtataataaatatccaggaatgtctcctggaatgttgact
gatttgaggtcagcttctgtgaataatgattgttatgcacaatctgcagtaaaatacgaa
ttacacaaacatattctccatggatctcaagatcttcaccgagctattgtcactactgtt
catgaatttgatcagttgtccatgaaaagtactttcgggtgggagtctgagacctcattt
cctaaggtacttggagatgtgatagagtctatagccggggcgattcttgtagattctgga
tacgataaagataaagtatttcagagtattaggcctcttcttgatcccttagtcacaccc
gagacactgaaactgcatccagtgaaagagttgcatgatatttgtcagaagaatcacttt
gaaatgaaaaagtcagccaagcgtggtactactgatgatggtaccatctctttcactata
gagatagtaaaagacaatattgtccttaaagattcttgcatggctgcagacaagaaaatg
gccgaaagactcgcgtcaaagtctgttttgaagttgcttaaagagtatttgtcagccgca
tga
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