KEGG   Lactuca sativa (garden lettuce): 111903017
Entry
111903017         CDS       T05352                                 
Name
(RefSeq) suppressor of mec-8 and unc-52 protein homolog 1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
lsv  Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lsv03041]
    111903017
Spliceosome [BR:lsv03041]
 Complex B
  Other components
   Complex B specific factors
    111903017
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 EIF3I WDR55 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML LisH_TPL ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_DCAF4 Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_NWD2_C Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_Nup120_160 Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Ge1_WD40 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_NUP159_NUP214 Beta-prop_VPS8 Beta-prop_HPS5 Beta-prop_SPT8 DUF7165 Beta-prop_WDR75_2nd VPS8_N PROPPIN Beta-prop_LRRK2 Mala_s_1-like Beta-prop_IFT122_2nd Beta-prop_IP5PC_F WD40_like zf_topless RMC1_N DUF5738
Other DBs
NCBI-GeneID: 111903017
NCBI-ProteinID: XP_023754581
LinkDB
Position
9:complement(61657794..61661207)
AA seq 513 aa
MSALEIEARDVIKIVLQFCKENSLHQTFQTLQSECQVSLNTVDSLETFVADINSGRWDAI
LPQVAQLKLPRKKLEDLYEQIVLEMIELRELDTARAILRQTQAMSVMKQEQPERYLRLEH
LLVRTYFDPHEAYQESTKEKRRAQIAQSIAGEVSVVPPSRLMALIGQALKWQQHQGLLPP
GTQFDLFRGTAAMKQDVDDKYPTTLGHTIKFGKKSHPESARFSPDGQFLVSCSVDGFIEV
WDHISGKLKKDLQYQAEESFMMHDDAVLCIDFSRDSEMLASGSQDGKIKVWRIRNGQCLR
RLENAHSQGVTSVVFSRDGSQLLSTSFDGTARIHGIKNGKLLKEFRGHSSYVNDATFTTD
GLRVITASSDCTVKVWDLKTTDCLQTFKPPPPLRGGDASVNSVHLSPKNPDHVIVCNKTS
SIYLMTLQGQVVKSFSSGKREGGDFVAACISPKGEWIYCIGEDKNLYCFSHQSGKLEHLM
KVHEKDVIGICHHPHRNLVATYGEDCTMKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctgccctagaaatcgaagctcgagatgtgattaaaatagttcttcagttctgcaaa
gagaactctctgcatcaaacattccaaacactgcaaagcgagtgccaagtatctttaaat
acagtggacagccttgaaacatttgtagcagatatcaacagtggtagatgggatgcaata
ttgcctcaagtggcacagcttaagcttccaagaaagaaacttgaagatttatatgaacag
attgttctagaaatgattgaacttcgggagttggatactgctcgtgctatattaaggcaa
actcaggcaatgagtgtcatgaaacaagaacagccagaaagatatttaagacttgagcat
cttctcgttagaacttattttgatccccatgaggcttatcaggaatcaacaaaagagaaa
agacgcgcacaaattgctcaatctattgcaggagaagtctctgtggttccaccatcacgt
ttaatggctctaattggtcaagcattgaagtggcaacaacaccaagggttactgccacct
ggaacacagtttgatttgtttagaggaacagctgctatgaaacaagatgtagatgataag
tatccaacaactcttggtcatactattaagtttggaaagaaaagtcaccctgaaagtgca
aggttctcacctgatggacaattccttgtttcttgctctgttgatgggtttattgaggtc
tgggatcacataagtgggaaacttaaaaaagatcttcagtaccaagcagaagaatccttc
atgatgcatgatgatgctgttttgtgtatcgattttagtagagattcagagatgcttgct
tctggatcacaagatggaaagattaaagtttggagaataagaaatgggcaatgtttgcga
cgccttgaaaacgcccattctcaaggtgtcacaagtgttgtgttttcacgtgatggaagt
cagttattgagcacttcatttgatggaactgcaaggattcatgggataaaaaatggaaaa
ttgttaaaggaatttcgtggtcattcttcttatgtaaatgatgccacttttacaactgat
ggacttcgtgtcattactgcatcaagtgattgtacagtaaaagtttgggatttgaagact
acagattgtctacaaaccttcaagccaccacctccattgaggggaggagatgcgtcagta
aattcggttcacctttctccaaaaaatccagaccatgttatagtttgcaacaagacatca
tcaatttatctcatgactcttcaaggacaggtggtgaaaagtttctcatctggtaaaagg
gagggtggagattttgttgcagcttgcatatcaccaaaaggggaatggatatattgtatt
ggtgaagataagaacttgtactgttttagccatcaatctgggaaacttgagcacttgatg
aaggtgcatgagaaggacgtaatcggtatttgccatcatccccaccggaatcttgtagcc
acttatggtgaagattgcaccatgaaactatggaagccttga

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