Lactuca sativa (garden lettuce): 111903446
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Entry
111903446 CDS
T05352
Name
(RefSeq) partner of Y14 and mago isoform X1
KO
K14294
partner of Y14 and mago
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03013
Nucleocytoplasmic transport
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111903446
03015 mRNA surveillance pathway
111903446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111903446
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111903446
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mago-bind
DUF5788
NDC80_loop
RAC_head
DUF7349
Motif
Other DBs
NCBI-GeneID:
111903446
NCBI-ProteinID:
XP_023754988
LinkDB
All DBs
Position
9:216085139..216086892
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AA seq
216 aa
AA seq
DB search
MANEIGGGGEDEAKEIAAQLSKTLKEGERILAPTRRPDGTLRKPIRIRAGYVPQDEVAIY
KSKGALLKKEMESLETVPPGYDPELDAISKPKSKSAKRNERKKEKRLQQASVEKGKSEAS
STDGVDQALEPLDSIVSQINDITISVATPPLNSTDHVPDIDKKIRALKKKIRLTEGQQQK
TGNDLKPEQQEKVAKLEDWRKELKLLEDKKASLEAL
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgaaattggcggaggaggagaagatgaagcgaaagaaatcgctgctcagcta
agcaaaaccctaaaagaaggagaaagaattcttgctccgacccgaagacccgacggaacc
ctacgcaaacccattcgcattagagctggttacgttcctcaagatgaagtcgccatttac
aaatctaaaggcgccctgttgaagaaggagatggagtcgctggaaactgtgccacctggt
tatgatcctgaattggatgccattagtaaacctaagagcaaatccgctaagaggaacgaa
aggaagaaggagaagcgtttacagcaggcgtctgttgagaagggaaaaagtgaagcttca
tctactgatggtgtagatcaagcattggaacctcttgactccattgtatcccagataaat
gatatcactatttccgttgctacccctcccttaaattcaacagatcatgttcctgatatc
gataaaaaaatccgtgccctaaaaaagaagattcggctgacagagggtcaacagcaaaaa
acagggaatgatttgaaaccagaacaacaggaaaaagttgcaaagttagaggattggcga
aaagagttgaaacttttggaagacaaaaaggcctccttagaagccttataa
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