Lactuca sativa (garden lettuce): 111903473
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Entry
111903473 CDS
T05352
Name
(RefSeq) TATA-binding protein-associated factor BTAF1
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111903473
Transcription machinery [BR:
lsv03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
111903473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
TOR1L1_N
HEAT_ECM29
TPR_Trm732_C
ResIII
HEAT_2
Motif
Other DBs
NCBI-GeneID:
111903473
NCBI-ProteinID:
XP_023755008
LinkDB
All DBs
Position
5:complement(157276245..157285722)
Genome browser
AA seq
2011 aa
AA seq
DB search
MAQQSSRLQRLLTLLETGSTQATRFTAARQIGEIAKLHPQDLSSLLHKVSQYLRSKNWDT
RVAAAHAIGAIAGCFKHSSMTELYNLVEAKMKEAGISCATEDEVLWPKSHPKISASTSFQ
SFELTKVLEFGALLASGGQEFEVANDFTNNPKERLAKQKQNLKRRLGMDVCEQFMDVNDM
IRDEDLVMHKPNSIGSGMNPQFYLQRPNRNVQQFVVDMVPGYRPRRPSARERNLLKRKAK
ISSKDQTKDVSGTQELISPKSISQDSPSSNSMFPDSIPDEESSEHEKDGTWPFHNIVEQL
ILDIFDPVWEVRHGSVMALREILTHQGGCAGVLTSDSCDDVSLTESEDKIKNGIKREREI
DLNMQITTEETEPVLKRQKSEIASFDQMDELVSTSDIGSNGEIIASSVKVEPHTEVAETL
QITNSFDNKDLVEKVDILEGLHGNNELANLIKRARNSSLKNSELLQDCGIRFLCVLSLDR
FGDYVSDQVVAPVRETCAQALGAVLKYMHPMLVHQTLNVLLKMQRRPEWEIRHGSLLGIK
YLVAVRQEMLPDLLGLVLPACKAGLEDPDDDVRAVAADALIPTASAIVSLSGEMLHPIVM
LLWDILLDLDDLSPSTSSVMNLLAEIYSQEEMISRMFSAFKVKQGFDLNEIVPVDDLTRA
SNSQENPYMLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAEYRRSISESSSSFWPSFI
LVDTLRIVFQNLLLESNQEILQCSERVWRLLLECPVEDLESAARSYMSSWIELITTPYGS
PLDSTKMFWPLALPRKSHFKAAAKMRAVKLENGLYTNVVSDSTEGTLPHDRNGDSSVKII
VGADSEMSVTNTRIVTSTALGILASKLHEVSDQYVFDPLWKAITSLSGVQRQVASLVLIS
WFKEMKNREVSGSKGLTNANYDTLKNRLLELLSCTDPAFPTKTSRLPYAELSRTYDKMRN
EASQLVNVLESCGMIDESKKMDVDNLTPDDAMAFITKLPLPSSDVTGEDSVGRNGLDEVE
SIKQRLLTTSGYLKCVQSNLHVTVSALVAAAVVWMSELPAKLNPIILPLMASIKREQEEV
IQNMAAEALAELVYHCVLRKPGPNDKLIKNLCGLVCMDPSETPQAGVLTSMEIVEEQDLL
PFGSNSTSTKQKPKVHMLANGEDRSKVEGFICRRGSEFALKHLCSKFGASLFEKLPKLWD
CLTEVLKPTTPGDEMHASQAIDSVKDPQVLINNIQVVRSIASMVDETLRPQLMTLLPCIF
TCVRHSHVAVRLSASRCITSMAKSMTVNIMGSVIENIIPMLGDMASVNARQGAGMLMSLL
VQGLGTDLVPYARLLVVPLLRCMSDCDHSVRRSVTHSFAALVPLLPLARGVSPPPGLSEC
LLSRSSDDAEFLEQLVDNSHIDDYNVPTELKVTLRRYQQEGINWLAFLKRFNLHGILCDD
MGLGKTLQASAIMASDIVERRASNNSEDPPSLIICPSTLVGHWVYEIEKFIDASVISSLQ
YVGSSQERVALRSQFQNYNVIVTSYDVIRKDVEHLRHMFWNYCVLDEGHIIKNAKSKITC
AVKQLKAQHRLILSGTPIQNNVLELWSLFDFLMPGFLGTERQFQATYGKPLAAARDSKCS
AKDAEAGVLAMEALHKQVMPFLLRRTKDQVLTDLPEKIIQDRYCDLSPVQLKLYEQFSGS
HVKNEISTMVQSNEAETETGEGEGKDASKTSSHVFQALQFLLKLCSHPLLVIGGKMQDSL
PRILPDLFATSSDINSELRKLHHSPKLVALQEILEECGIGVEGSTSEGSVSVGQHRVLIF
AQHKALLDIIEKDLFHVHMKSVTYLRLDGSVEPEKRFDIVKSFNSDPTIDVLLLTTHVGG
LGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQKF
KVSVANAVINAENASLKTMNTDQLLDLFTPADNNNNTKKGASTSENMDGLAKVPGGGKGL
KAILGGLEELWDQSQYTEEYNLTQFLAKLNA
NT seq
6036 nt
NT seq
+upstream
nt +downstream
nt
atggcacaacaatcttctcggctccaaaggctgctaactttactggagactggctcaaca
caagctacaagattcactgcagctcgccagataggggagattgcaaaattacatcctcag
gacttgagctctctgctgcataaggtctctcagtatctccgtagcaaaaactgggataca
agagttgcagctgctcatgccattggagcaattgcaggatgttttaaacattcatctatg
acagaactgtataatcttgttgaggcaaagatgaaggaagctggcataagttgtgccact
gaggatgaggttttgtggccaaagtctcatcccaaaataagtgcaagcacttcatttcag
agcttcgagctcactaaagtgctggaatttggggctcttttggcatctggaggacaggag
tttgaagttgctaatgattttaccaataacccaaaagaaagattggccaaacaaaagcaa
aatttaaaacggcggttgggaatggatgtatgtgagcagttcatggatgtaaatgatatg
ataagagatgaagatcttgtaatgcacaaaccgaattccattggaagtggcatgaatcct
caattttacctacaaagacctaatcgtaatgtgcagcagtttgttgtagatatggtacct
ggttatagaccaaggaggccaagtgcacgtgaaagaaacctcttaaaacgcaaagccaaa
ataagttcaaaagatcaaacaaaagatgtgtcaggcactcaagagctcatttcacccaaa
tccatttctcaagattcaccttcttccaattcgatgtttccggattctattcctgatgaa
gagagctctgagcatgaaaaagatggtacatggccttttcataatatagttgaacaactc
attcttgatatctttgatcctgtttgggaggtgcgacatggcagtgtgatggctttaagg
gaaatcttgacacatcaaggtggctgtgctggcgttcttacatcagacagttgtgatgac
gtgtcactaacagagtcagaagataagattaagaatggtatcaagagagaacgtgaaatc
gatttgaacatgcaaataacaacagaagaaactgagccagttctcaagaggcagaagtct
gaaattgcatcatttgatcagatggatgaattagtctccacatctgatattggatccaat
ggtgaaataattgcaagctctgttaaggttgagcctcatacagaagttgcagaaacgttg
cagataacaaattcttttgataataaagatttagtggaaaaggtagacatactggaaggc
cttcatggaaataatgagctggcaaacttgattaaaagggccagaaattcatcactgaaa
aactcagaacttcttcaagattgtggaattcgtttcttgtgtgtgctgtcactagatcgt
tttggagattatgtctctgatcaggttgttgctccagtacgtgaaacatgtgcacaggca
ttaggagcagtgcttaagtacatgcatcctatgctagttcatcagacactgaatgttctt
ttgaaaatgcagcgtagaccagagtgggaaattcgccatggcagtcttttgggtattaaa
tatttggttgctgtgcgccaggagatgcttcctgatttgctggggcttgtccttcctgct
tgtaaagcaggactagaagatcctgatgatgatgtgagagcagttgctgcagatgcttta
attcccactgcatctgccattgtttcacttagtggagaaatgttgcatcctattgtgatg
ttactgtgggatattttgcttgatttggatgatttaagcccctccacaagcagtgtgatg
aatctacttgcagaaatatattcccaggaagagatgatttctagaatgttctctgctttc
aaagtaaaacaaggatttgatctgaatgagattgttcctgttgatgatcttacacgtgca
tcaaattctcaagaaaatccttacatgctgtcaacattagctccaagattgtggccattt
atgagacatagtatcacatctgttcgttattcagccattcgcacattagagcggctgctt
gaagcagaatacagaaggagtatatctgaatcttcttcctccttttggccttcttttata
ctggttgacacccttagaattgtcttccaaaatctgcttcttgaatcaaatcaggaaatt
ttacaatgctcagaaagggtctggaggttgcttctcgagtgtccagtggaagatttggaa
tctgctgcacgctcatacatgtcatcttggatagagcttataactactccatacggatca
ccactggattccacaaaaatgttttggccacttgcccttccacgtaaaagtcactttaaa
gctgcagcaaaaatgagagctgtgaagcttgaaaatggtctttacaccaatgtagtctca
gattccacagaaggaactcttcctcatgatagaaatggagattcctctgttaaaataatc
gtaggtgcagatagtgaaatgtcagttacaaacacacggattgttacatcaacagcttta
ggaattttagcatccaagttgcatgaggtttctgaccaatatgtttttgatcctttatgg
aaagccatcacatctttatctggagttcagcgacaggtggcatctttggttctgatttct
tggtttaaagagatgaagaatagagaagtttctggaagcaagggactgacaaatgcaaac
tatgatactttaaagaacaggttgttggagttgctatcgtgcacagatccagcttttcct
acaaaaacttcacgtcttccttatgctgaactttctagaacctatgataaaatgcgaaat
gaggcatctcagcttgttaatgttcttgaatcatgtggcatgattgatgagtctaagaaa
atggatgtggataatttgactcctgatgatgcaatggcatttattacaaaactgccattg
ccaagtagtgatgttactggagaagattcagttgggaggaatggtcttgatgaagtagag
tctataaagcagagacttttgaccacttcaggctacttaaaatgtgtccagagcaatttg
catgttactgtatcggccttagttgctgctgcagttgtttggatgtctgagcttcctgca
aaacttaatccaattatattacccttgatggcctcaatcaagagagagcaggaggaagta
atacaaaacatggcagctgaagctcttgcagagcttgtataccattgtgtgctacgtaag
ccgggtcccaatgacaaattaatcaagaatctttgtggattagtatgcatggatcctagt
gagacccctcaagctggagtgttgacttcaatggagattgttgaagaacaagatctcctt
ccttttggaagtaattctacttctaccaaacaaaaaccaaaagttcacatgcttgctaat
ggtgaagacagatcaaaagttgagggatttatttgtaggagaggatcagaatttgctttg
aagcatctatgcagtaaatttggtgcttcattgtttgaaaagcttcctaagctttgggat
tgtcttactgaagtattgaagcctactacccctggagatgaaatgcatgctagtcaagcc
attgattctgttaaagaccctcaagttttgataaataatatccaggtggttcgatctatt
gcttcaatggtagatgagacattacgcccccaactgatgacactcctcccatgcattttc
acctgtgtccgccattctcatgttgctgtgagactatccgcttcaagatgcatcacatca
atggcaaagtcaatgacagtcaacatcatgggctcagtaatcgaaaacataatccctatg
ttgggtgacatggcatctgtgaatgctagacaaggagcagggatgctaatgagtctgctt
gttcaaggattaggcactgatcttgttccttatgcaaggctgttagttgtccctctttta
aggtgtatgagtgattgtgatcattctgttagaagaagtgtcacacacagctttgctgcc
cttgtccctcttttgccccttgcacgtggtgtctctcctcctcctggattgagtgaatgc
ctgttgtctagaagtagtgatgatgctgagttcctggagcaacttgttgataactcacat
attgatgattataatgttcctactgagttgaaagtcaccctgagaaggtatcagcaagag
ggtataaactggttagcatttttaaagaggtttaaccttcatggaattttatgtgatgat
atggggcttggtaaaaccctacaagcatcagcaattatggcatctgatattgtggaacga
agagcttcaaataacagtgaggaccctccatctttaatcatttgcccatctacccttgtt
ggacactgggtatatgagattgaaaaattcattgatgcctctgttatatcttcactccaa
tacgttggttcttcacaagagcgtgttgcattgcgttcacagtttcaaaactacaatgtc
attgtaacttcttatgatgtgattcgtaaagatgttgagcatttgagacacatgttttgg
aactattgtgttttggatgaaggccatataattaagaatgcaaaatcgaaaatcacatgt
gctgtcaaacagctcaaggcacaacacaggcttatattaagtggaacaccaattcagaat
aatgtgttggagttgtggtctctttttgactttttgatgcccggatttcttggaacagag
agacagtttcaagcaacttatgggaaaccactagctgcagctcgtgattctaaatgttca
gccaaggatgctgaagcaggtgtacttgccatggaagcattgcacaaacaggtgatgcct
ttcctcctgcgtcgcacgaaagaccaagtgttgacagatctaccagagaaaataattcaa
gatagatactgtgacttgagtccggttcaacttaaactttatgaacagttttcaggttca
catgtcaaaaatgaaatttccactatggtccaatcaaatgaagcagaaacagaaacaggg
gaaggggaaggaaaagatgcatccaaaacatcttctcatgtcttccaggctcttcagttt
ttactgaaactctgcagtcatccattgcttgtgattggtggaaaaatgcaagactcactt
ccgcggattttacctgatctttttgcaacaagctctgatattaactcagagcttcgtaaa
ctgcaccactccccaaagttggttgcccttcaagaaatcttggaggagtgtgggataggt
gttgaggggtcaacttctgaaggctctgttagtgttggccagcacagagtcctcatattc
gcacagcataaggcacttctggacattatcgagaaagacttgtttcatgtccacatgaaa
agtgttacatatctgcggttggatggatcggttgaaccagaaaaacggtttgacattgtt
aaatctttcaattcagaccctactatcgatgttttgcttcttacaacacatgttggtggc
cttggtttgaatttaacctcagctgatacgctagttttcatggagcatgattggaatcca
atgcgtgatcatcaggcaatggatagagcacataggttgggacaacggaaggtagtgaat
gtgcatcgtctgataatgcgagggactttagaagaaaaagtgatgagcctccaaaaattc
aaagtatctgtcgccaatgctgtcattaatgcagaaaacgcaagcctcaaaaccatgaac
accgatcaattgctcgatcttttcactccagcagataataataataatactaaaaagggt
gcgtccacttcggaaaacatggatggattggcaaaggtgccaggtggcggaaaaggccta
aaagcaatccttggtgggctggaggagctttgggaccagtcacagtacacggaagaatac
aatttgacccaatttttagccaagttgaatgcctga
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integrated database retrieval system
