Lactuca sativa (garden lettuce): 111903961
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Entry
111903961 CDS
T05352
Name
(RefSeq) protein transport protein SEC16B homolog isoform X1
KO
K20353
COPII coat assembly protein SEC16
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsv04131
]
111903961
Membrane trafficking [BR:
lsv04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
111903961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
111903961
NCBI-ProteinID:
XP_023755508
LinkDB
All DBs
Position
6:complement(162818122..162823338)
Genome browser
AA seq
1236 aa
AA seq
DB search
MEDTDEDFFDKLVDDVDDHFKATSSSSTVNDSNKAKANSSINNGRNALKESEKVVIEDDK
ASSTISSGLIDELASNRVDPGQSLVSSSSFAFNSVNEEPNNAIRMEERFDSTEVQWSAFT
TDPLHNTSNSFGSYSDFFTEFGDNSVHQSKGGNLIHNEVNSSNDYSHQYQEGQLYTTSGG
QTTDNQDLNTSEYWENLYPGWKYDTNSGQWYQVDQSYDPTTNTQAVDTLSSASDYQASQS
LVADKGMNESVTSWSPVSQTSQTNESQSQGNNGYPSHMYFDPQYPGWYYDMNLQEWRCLD
SYNSQATTNTVNQGDHISSSNSYYGNEQQGSTGYQHVQNQYSSNFPVDNNNVNHQQQQQQ
QQQQQQQCYDYGNFNQSTTMEQSEMMNAGKGYGSQNQLTYSHHGSYGSNRSSAGQPPHAL
VTFGFGGKLIVMKDTSGGPISVLNMAEIVTGGGDMATGGTRICGYFHTLCRQSFPGPLAG
GNVGGKELNRWIDERITQSHPLADMDYKKDQVLKLLLSLLKIASQHYGKLRSPFGTDTTS
KENDAPDVAVARLFASAKKDTSQYGDYGAFANCLQQLPPEGQIRATAAEVQTLLVYGRKI
EALQRAQEGQLWGIALVLAAQLGDQFYVDCVRKMGVHQLVAGSPLRTLCLLIAGQPADVF
STDSTTDSATVAAVNMSQSQLGANAMIDDWEENLAMITANRTKDDELVLIHLGDCLWKET
SNIIAAHICYLVAEANFEAYSDSARLCLIGADHWKHPRTYACPEAIQRTEVYEYSKLLGN
SQFTLIPFQPYKLIYANMLAEVGRVSDSLKYCQVISKSLKTGRAPEAETWRHMVSSLEDR
IKTHQQGGFSTNLAPGKLVGKLLNLFDSTAHRVVGGLPPPVPSTSGPTAQNEHHTHPHHH
NHNHQPRVSASQSTMAMSSLVPSASMESEEGNNRRIMHNRSVSEPDFGRSPRQDQVDSSK
ENPTDSQTNSSFTSRFGRFGFGSQLFQKTFSLVLKPRQDKQAKLGETNKFYYDDKLKRWV
EEGVDPPAEEAALAPPPTTAAFQNGTPKTTAKNEGSLSNGGLEFSTGTTTVGHSSGIPPI
PASSGQFSARGRMGVRARYVDTFNQGGGNPTKSFQSPPTTSLKPVTKSNPKFFVPVPSSQ
QSNSFHGNNTQQKTTSVDEINDSPPFQTPTYQSMQRFGSMDDLGKGGMGMPVFPSNTCSR
RTVSWGGSMDQRFCNQRNRGNNGDGFMSEDLHEVQL
NT seq
3711 nt
NT seq
+upstream
nt +downstream
nt
atggaggacactgatgaagatttctttgataaattggtcgatgatgttgatgatcatttt
aaggccacttcatcatcttcaaccgtgaatgattctaataaggctaaagctaattcaagc
atcaataatggcagaaatgcactcaaagaatcagagaaagtagttatagaagatgataaa
gcttcttccacgattagttcaggtctcatagatgaattagccagcaatcgagtggatcct
ggtcagtcattagtgtcatcttcttcctttgcatttaattctgtaaatgaagaaccaaat
aatgcaattcgaatggaggaacgatttgattcaacagaggtgcagtggagtgctttcact
actgatcctctacacaacactagtaattcatttggatcatactctgacttcttcacagaa
tttggagataattccgttcaccagtcaaaaggaggcaacttgattcacaatgaagtgaat
tcaagtaatgattattcacatcaatatcaagaagggcagttgtatacaacatccggggga
caaactacagataatcaagatcttaacacgagtgaatattgggagaatctttatccagga
tggaagtatgacaccaattctggacaatggtatcaagttgatcaaagctatgatccaaca
acaaacacacaagcggttgatactttgagttctgcttctgattaccaagcttcccaatct
ttggtagcagataaagggatgaatgaaagtgtaacaagttggagtccagtttcacaaact
agtcaaactaatgagagtcaatcacaaggaaacaacgggtacccttcacatatgtatttt
gatcctcaatatccaggttggtattatgacatgaatcttcaagaatggcgttgtttggat
tcatataattctcaagcaaccaccaacactgtaaaccaaggtgatcatatttcatcaagt
aatagttattatggaaatgaacaacaaggttcaactggataccaacatgtacaaaatcag
tatagctctaattttcctgtagataataacaatgtcaatcatcaacaacaacaacaacaa
caacaacaacaacaacaacagtgttatgattatgggaacttcaatcaatcaacaacaatg
gagcaaagtgagatgatgaatgctggcaaggggtatggaagtcaaaaccaattgacctac
tcacatcatggatcttatggctctaataggtcatctgcaggtcaacctcctcatgccttg
gttacttttggttttggtgggaagttgattgtgatgaaggatacaagtggtgggccaatt
tctgttcttaacatggctgaaattgtgaccggaggtggtgacatggcaaccggtgggacc
cgcatatgtggttactttcacactctttgccgccaatcattccctggtccacttgctggt
ggaaatgttggtggtaaagagctgaatagatggattgatgagagaatcacacagtcacac
cctcttgctgacatggattataaaaaagatcaagttttaaagcttctactttctttactc
aaaatagcttcacaacattacgggaaattacgttctccttttggcaccgacactacatca
aaggaaaacgacgccccggatgtagcggttgctagactatttgcatctgcaaagaaagac
acttctcaatatggcgattatggtgctttcgctaactgcttgcaacagttgccaccagaa
ggacaaattcgggcaactgctgctgaagtccaaactcttctggtttatggtagaaagata
gaggctcttcaacgtgcacaagagggtcaattatgggggattgccttagttcttgcagca
caacttggtgatcagttctatgtggattgtgtaaggaagatgggtgttcatcagctagta
gcagggtcacctttaaggacattatgtctacttattgctggtcaacctgcagatgtattt
tcaactgactctacaacagatagtgccactgttgctgctgtaaatatgtcacagtctcaa
cttggtgctaatgctatgattgatgattgggaagaaaatttggctatgattactgctaac
aggaccaaagatgatgaattggtgcttattcatcttggagattgtttatggaaggaaaca
agtaatattattgctgcacacatttgctacttagttgctgaagcaaactttgaggcgtat
tcagacagtgctagactgtgtctcattggtgcggatcactggaagcatccaagaacatat
gcctgtccagaagccattcagaggacagaggtgtatgaatattcaaagcttttggggaac
tctcagtttaccttgataccatttcaaccatataagcttatatatgccaatatgttggct
gaagtaggaagagtatctgactcattaaagtattgtcaagtgatatcaaaatctttaaaa
actgggcgagccccagaagcagaaacatggagacatatggtttcatccttagaagatcgc
ataaaaacccaccaacagggtgggttctctacaaacttggctccgggtaaattagttgga
aaactgctcaacctttttgacagcacagcacaccgtgtagtgggaggactcccgccacct
gtcccatcaacatcgggccccactgcacaaaatgagcaccatactcatccacatcatcat
aatcataatcatcaacctcgggtgtctgccagtcagtccaccatggccatgtcatcatta
gttccatctgcatccatggaatctgaagaaggaaacaacagaagaatcatgcataataga
agtgtttctgagcctgactttggtcgctctccccgccaggatcaggttgattcatcaaaa
gaaaaccctacggattcacaaactaattcatcatttacttcaagatttggtcgatttgga
tttgggtcacaacttttccaaaagactttcagtttagttctaaaacctcgtcaagacaaa
caggcgaaattaggcgagacaaacaagttttattacgatgacaaactaaaaagatgggtg
gaggaaggtgttgatccgccagcagaagaagcggcacttgcaccaccaccaaccacggcg
gcattccaaaacggaacacccaaaaccaccgccaagaatgaagggtctctcagcaatggc
ggcttggaattttccaccggaaccaccaccgtgggacacagctccggcatcccgccgatc
cccgcctcctcaggtcaattttctgcacgtggaagaatgggtgtacgtgcaagatacgtg
gacacattcaaccaaggtggtggaaacccaacaaagtcgttccaatcaccacccactact
tctttaaaacccgtcacgaaatcaaaccctaaattcttcgttccagtaccttcatcccaa
caatccaactcatttcatggtaataacacgcaacaaaaaaccacaagtgttgatgaaatt
aacgattcgcctccattccaaacaccaacttatcaatcaatgcaaagatttggaagcatg
gatgatttgggaaaagggggaatgggaatgcctgtgtttcctagtaacacgtgttcacga
agaacggtttcatggggaggaagtatggatcaacggttttgtaatcagaggaatcggggg
aataatggtgatgggtttatgagtgaggatcttcatgaggttcaactctag
DBGET
integrated database retrieval system
