KEGG   Lactuca sativa (garden lettuce): 111904299
Entry
111904299         CDS       T05352                                 
Symbol
TEX1
Name
(RefSeq) transducin/WD40 repeat-like superfamily protein isoform X1
  KO
K12880  THO complex subunit 3
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03013  Nucleocytoplasmic transport
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111904299 (TEX1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    111904299 (TEX1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsv03019]
    111904299 (TEX1)
   03041 Spliceosome [BR:lsv03041]
    111904299 (TEX1)
Messenger RNA biogenesis [BR:lsv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     111904299 (TEX1)
Spliceosome [BR:lsv03041]
 Complex C
  Other components
   EJC/TREX
    111904299 (TEX1)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    111904299 (TEX1)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_Prp19 WD40_CDC20-Fz WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_WDR36-Utp21_1st Beta-prop_Aladin Beta-prop_RIG_2nd DSE1_N Beta-prop_TEP1_C Beta-prop_Vps41 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st eIF2A Beta-prop_EML Beta-prop_WDR35_TULP_N Beta-prop_EIPR1 NBCH_WD40 Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_HPS5 Tricorn_2nd TRM82_WD Beta-prop_DCAF12 Beta-prop_IFT80_2nd Beta-prop_NUP159_NUP214 B-prop_COPA_B_2nd Beta-prop_WDR41 WDR90_beta-prop_4th PAC11 Beta-prop_Nup120_160 CFAP251_N WD_LRWD1 Beta-prop_WDR11_1st DUF7099 TP_0598_N
Other DBs
NCBI-GeneID: 111904299
NCBI-ProteinID: XP_023755839
LinkDB
Position
3:191663410..191666265
AA seq 313 aa
MAETIPFKNLHSREYQGHKKKVHSVAWNCIGTKLASGSVDQTARVWHIEPHGHSKVKDLE
LKGHTDSVDQLCWDPKHADLIATASGDKTVRLWDVRSGKCSQQAELSGENINITYKPDGT
HVAVGNRDDELTILDVRKFKPIHKRKFNYEVNEIAWNMSGDMFFLTTGNGTVEVLGYPSL
QAVDTLTAHTAGCYCIAIDPLGRYFAVGSADSLVSLWDISEMLCVRTFTKLEWPVRTISF
NHTGEYIASASEDLFIDISNVESGRSVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNKYQA
DEGVFRIFGFESA
NT seq 942 nt   +upstreamnt  +downstreamnt
atggcagaaacaatacccttcaaaaacctccacagtagggaatatcagggccacaagaag
aaggtacattcagtcgcttggaattgcattggcacaaagcttgcatcgggctctgtggat
caaacagctcgggtatggcatatcgagccccatggccacagcaaggttaaggatcttgaa
ctaaaggggcatacagatagtgtagatcagttatgttgggatcctaaacacgccgacttg
attgccactgcttcaggcgacaagactgttcgtctatgggatgtccgcagtggaaaatgt
tcacagcaagcagaactcagtggggagaacattaacattacctataaaccagatgggact
catgtagcagttgggaaccgggatgatgaactgacaatactagatgttcgaaaattcaaa
cccatccataaacgcaaattcaactatgaggtaaatgagattgcatggaacatgagtggg
gacatgttcttcttgactactggaaatggtactgttgaagtactgggatacccatcgctt
caagcggttgacaccttgacagctcatactgctggttgttattgcattgctattgacccc
ttgggaagatattttgctgttggaagtgcggattcgttggtgagtctgtgggatatctcg
gaaatgctttgtgtgcgtacattcacaaagctcgaatggccagtgcggaccataagcttc
aaccacacgggggaatatatcgcttccgctagtgaagacttgttcattgacatatcgaat
gtagaaagtgggaggtcagttcaccaaatcccgtgtcgggcagcaatgaacagcgtggag
tggaatccaaaatacaatttgcttgcgtatgctggtgatgacaaaaacaagtatcaggcg
gatgaaggtgtttttcggatatttggctttgagagcgcataa

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