KEGG   Lactuca sativa (garden lettuce): 111904627
Entry
111904627         CDS       T05352                                 
Name
(RefSeq) autophagy-related protein 16
  KO
K17890  autophagy-related protein 16-1
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    111904627
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lsv04131]
    111904627
   03029 Mitochondrial biogenesis [BR:lsv03029]
    111904627
Membrane trafficking [BR:lsv04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    111904627
 Others
  Specific organelles associated proteins
   Auto phagosome
    111904627
Mitochondrial biogenesis [BR:lsv03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    111904627
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_SCAP ATG16 Beta-prop_RIG_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_SPT8 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_NWD2_C Beta-prop_VPS8 NBCH_WD40 WDR54 Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_Nup120_160 Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_IFT122_1st B-prop_COPA_B_2nd Beta-prop_WDR19_1st Beta-prop_NUP159_NUP214 Beta-prop_Vps41 PEP5_VPS11_N Beta-prop_RIG_1st SHE3 Cytochrom_D1 DUF5888 BBS2_hp
Other DBs
NCBI-GeneID: 111904627
NCBI-ProteinID: XP_023756137
LinkDB
Position
4:132142440..132145827
AA seq 511 aa
MAEDEVGINAIKHAMRALRKRHLMEEGAHAPAFTAISKPIASQGMEWKDKAETLELELQQ
CYKTQVRLSEQLVVEVAESRASKALVQEKEAIIPSLENEISQARDECSRLTALLEEKTKA
LKLLIGENQDLRTQYEDMRAKANNVEAENKTLIDRWNLQKMKDSERFNEVNALYQDILNK
LKASGLEQLARTQIDGVVRQSEQGAEHYVETTTIPKTCTHRITAHEGGCASLIFENSSGK
LISGGQDQTVKTWDTNTGSLTRTYHGCLGSILDLTITNDNNYIIAASSSNNLYVWDTNSG
RVRHTLTGHLDKVCAVDVSRCSSRHVVSSGYDRTIKVWDLNKGYCVNTIIFPSNCNTVCF
NSDGGTIISGHVDGHVRLWDIKTGKVLSEVAAHSLAVTSVCVSRNGNMVLTSGKDNLHHL
FDVRSLEVCGTFSGSGSKVASNWSRSCISPDDNYVAAGSVDGCVYVWSISKGDIASTLKE
HTASVLCCSWSGLGKPLATSGRNGTICLWSH
NT seq 1536 nt   +upstreamnt  +downstreamnt
atggctgaggatgaagttgggataaacgcaataaagcatgccatgagagctcttagaaag
cgtcatctcatggaggagggagctcatgctcctgcttttacagctatttcaaaacctatt
gcttctcagggtatggagtggaaagataaggcagaaactcttgaattggaacttcaacaa
tgttataaaactcaagttcgattatcagagcagcttgttgtggaagttgcagagtccaga
gcatcaaaagctttagttcaggagaaagaagccataattcctagtcttgaaaatgagatt
tcccaagcaagggatgagtgttctcgtttaacagcacttttggaggaaaagacgaaagcc
ctaaagttgcttattggtgagaatcaggacttaagaactcaatatgaagatatgagagca
aaagctaacaatgtggaggctgaaaacaagacattaattgataggtggaatttgcagaaa
atgaaagattctgaacgttttaatgaggttaacgctctataccaagatatcctcaacaag
ctcaaagccagtggtctagaacaactcgccaggacacaaattgatggagtagttcgccaa
agtgaacaaggcgctgaacactacgtagagaccaccaccataccaaaaacatgcacacac
aggatcacagcccacgaaggcggctgcgcatccttaattttcgaaaacagttccggaaaa
ctaatcagcggtggacaagaccaaacagtcaaaacatgggacacaaacaccgggtcgcta
actcgcacctaccacggttgcctagggtcaatccttgacctcacaatcacaaacgacaac
aactatataatcgcagcaagtagctcaaataatttatacgtatgggatacaaattctggt
agggtccgccatacgctgactggtcatttggataaagtatgtgcggttgatgttagcaga
tgttcaagtcgccatgttgtcagttcgggttatgatcgtacgattaaagtgtgggatttg
aataaagggtattgtgtgaatactataatattcccgagtaattgtaatactgtatgtttt
aattcggatggggggacgattatttcgggtcatgttgatggacatgtgaggttatgggat
ataaaaacagggaaggtgttgagtgaggtggctgcacattctcttgctgttacttctgtt
tgtgtttctagaaatgggaatatggtgttgacaagtgggaaggataatttgcatcatttg
tttgatgtaaggagtcttgaagtttgtgggacgtttagtggaagtgggagtaaagttgct
tctaattggagtaggtcgtgtattagtccggatgataattatgttgctgcggggtctgtt
gatgggtgtgtttatgtgtggtcgatttcgaaaggtgatatagcgagtactcttaaagaa
catacggcttctgtactttgttgttcttggagtggtcttggaaagcctttagctacttcg
ggtaggaatggaactatctgtttgtggagccattga

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