Lactuca sativa (garden lettuce): 111905201
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Entry
111905201 CDS
T05352
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03030
DNA replication
lsv03420
Nucleotide excision repair
lsv03430
Mismatch repair
lsv03440
Homologous recombination
lsv03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111905201
03420 Nucleotide excision repair
111905201
03430 Mismatch repair
111905201
03440 Homologous recombination
111905201
03460 Fanconi anemia pathway
111905201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsv03000
]
111905201
03032 DNA replication proteins [BR:
lsv03032
]
111905201
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111905201
Transcription factors [BR:
lsv03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
111905201
DNA replication proteins [BR:
lsv03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
111905201
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
111905201
MMR (mismatch excision repair)
111905201
DSBR (double strand breaks repair)
HR (homologous recombination)
111905201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
zf-CCHC_2
zf-CCHC_5
DUF223
CDC24_OB3
zf-CCHC_3
DUF936
zf-like
zf-CCHC_4
Ribosomal_L37ae
Motif
Other DBs
NCBI-GeneID:
111905201
NCBI-ProteinID:
XP_023756651
LinkDB
All DBs
Position
3:37910372..37914852
Genome browser
AA seq
817 aa
AA seq
DB search
MAVQLTEGAIEMLSSGKWQPADVKPVLQVIELRAVPSQNSSAVSGGEKQERYRLMLSDGL
FFQQAMLATQRNELVKSQQMQRGSVVQLKEYVCNFIRDRPILIVINLDVIMATCDVIGDA
KPFSLRSGNEPPISRSPSPMQPSNQPATTMGSPQTFMGGSVPRPVNSPIYPPQQDHNTSL
HSYGNPLSTHSVAAVSHPPTNSYVRPIQPTYNQPPPMYANRGPMAKNEAPARIIPIAALN
PYQGRWTIKARVTSKAELRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVADQFYDQIE
IGKVYFISKGSVKPAAKAFNHLKNDHEILLDTSSTIQPCVDDDNSIPHQQFHFRSIADIE
GLENNSVLDIIGVVSSITPTSTLMRKNGTETQKRTLQLKDMSGRSVEVTLWGNFCSTEGQ
TLQNMCDSGVFPVLAVKSARVSDFNGKSLGTISTSQLCIEPDFPEARKLKTWFESVGKIT
PSVSLSRDAISRTDVRKTISQIKDEKLGTSEKPDWITVNGTIWHLRVENFCYTACPIMTG
DRQCSKKVTRNEEGIWKCDKCDKIVDECEYRYILQFQIQDHTGSTWVTAFQESGEEIMGV
SAKDLYHMKNEEQDEEEFTKAVRKVLFSRYNFKLKVKEETFSDEQRVKSTVVKAEKIKNL
SSETTLLLDLLKKEDMVSVGIGQPKVEMAIPSYGGNGIKDSGGFSGVGQYGNQYGGSSSS
SRVGSSCNSCGGVGHNSANCPSGYNSQGGRFNSVVSGGGNSHAPSPSPSAYGGGSNLCFK
CNQPGHWARDCPGTGGGNGNVATGRYGGASGQYVGGY
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaactgacggaaggcgcaatagagatgctatcttctgggaaatggcaaccg
gcggacgtgaaacctgtgcttcaggtgatagaacttcgggctgttccgtcacagaattct
tctgctgtaagtggaggagaaaaacaggagagataccggcttatgctatctgatggcttg
ttttttcagcaagcgatgcttgctactcagcggaatgagttggttaaatctcagcagatg
cagaggggctctgttgttcagttgaaggagtatgtctgtaatttcatccgtgaccgaccc
attttaatagtcatcaaccttgatgtgattatggcaacttgtgatgttatcggtgatgca
aaaccgttttcacttaggtctggcaatgagcctcctatatcaaggtctccctcacctatg
caaccctccaatcagccagcaacaaccatgggtagtcctcaaaccttcatgggtggctct
gttccacgacctgtaaattccccaatttaccctcctcaacaggatcataatacaagttta
cactcttatggtaaccctttgagtacccattctgttgctgctgtttcacatccacctaca
aacagttatgtccgcccaatccaaccaacatataaccaaccacctccaatgtatgcaaac
aggggacccatggctaaaaacgaagctccagctaggattatccccattgctgctttgaac
ccttatcaaggtaggtggactataaaagccagagtgacttcaaaagcagaactcagacgt
tacaacaatgcaaaaggagatggaaaagtcttttcctttgaccttcttgactctgatggt
ggtgaaatacgtgtcacatgcttcaatgctgtagctgatcaattctatgaccaaattgaa
atcggtaaagtttacttcatttcaaaaggcagtgtaaaacctgctgcaaaagcttttaat
catttaaaaaacgaccatgagatcttacttgacacctcatcaaccattcaaccttgcgtt
gatgatgacaattccattccccatcaacagtttcatttccgttccattgctgatatcgaa
gggctggagaacaacagtgtgttggatattattggtgtggtttccagtattacccctacg
tctaccctaatgagaaaaaacggcaccgaaactcaaaaaagaactttacagcttaaagac
atgtctggaagaagtgtggaggtgactttatggggtaacttttgttccacagaagggcag
acacttcaaaacatgtgtgattctggtgtgtttcctgttttggctgtgaagtctgccaga
gtgagtgacttcaatggtaaatccttagggacaatatccacaagccagctatgtatagaa
cctgatttcccagaggctcgaaaacttaaaacatggtttgaaagtgttgggaaaatcacc
ccttctgtttctttatctagggatgctatatccagaacagatgtgagaaaaactatctca
caaatcaaagatgaaaaactggggacatctgaaaaaccagactggatcacagtgaatggg
actatatggcatttgagagttgaaaacttttgttacacagcgtgtccgatcatgacaggt
gatcgacaatgcagtaaaaaagttacaaggaatgaagaagggatatggaaatgtgataag
tgtgataagattgttgatgagtgtgaatatagatatatccttcagtttcaaatacaagat
catactgggtcaacttgggtaactgcttttcaagaaagtggtgaggaaataatgggggtt
tctgctaaagatttgtatcacatgaaaaatgaagaacaagatgaggaggagtttactaaa
gctgtccggaaggttctgtttagtagatataactttaagttgaaagtgaaggaagagact
ttcagcgatgaacagcgtgtgaagtccactgttgtgaaagctgagaagataaaaaatctt
tcatccgagactactcttttgcttgatttacttaaaaaagaggacatggtttctgttgga
ataggacagccaaaggtggaaatggcgattccttcatatggtggaaatggaatcaaagat
tccggaggttttagtggagtaggtcaatatgggaatcaatatggtggttcttcttctagt
tctagggttggtagtagctgcaatagctgtggtggtgtggggcataactctgcaaactgt
ccaagtggatataatagtcaaggaggaaggtttaatagtgtggtttctggaggtggaaat
agtcatgcaccttcaccttcaccttcagcttatggtggtggatctaatttgtgttttaag
tgcaatcaacctggacattgggcaagagattgtcctggtactggtggtggaaatggaaat
gtagccacaggaagatatgggggcgcgtctgggcaatatgttggtggttattga
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