Lactuca sativa (garden lettuce): 111905324
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Entry
111905324 CDS
T05352
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111905324
03041 Spliceosome [BR:
lsv03041
]
111905324
03036 Chromosome and associated proteins [BR:
lsv03036
]
111905324
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111905324
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111905324
mRNA cycle factors
Common to processing body (P body) and stress granule
111905324
Spliceosome [BR:
lsv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111905324
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111905324
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
111905324
NCBI-ProteinID:
XP_023756784
LinkDB
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Position
6:complement(53476789..53480501)
Genome browser
AA seq
632 aa
AA seq
DB search
MRSSWADSVDNTASGSDNNGVGGAPGAGGKPAYVPPHLRNRPPAQMQAAPSATSQSGAPP
ANDRLGYGGQTSGSRWAAPRQDYSRPGYGTGGRGGGGGGGWGNRGGSWGGGGGRDMEVNP
FGNEDIDSAEEITTEQENNGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNLNIRR
CKYVKPTPVQRYTIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGQFAQRPRGTRTV
FPLALILSPTRELSCQIHEEARKFSYQTGVKVVVVYGGAPINQQLRELERGVDILVATPG
RLVDLLERAKVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQTDMPPPGQRQTMLFSATF
PREIQRLASDFLSNYIFLTVGRVGSSTDLIVQRVEFVQEVDKRSHLMDLLHAQKENDSNT
KALTLVFVETKKGADSLEHWLYSNGFPATTIHGDRSQPEREQALRSFKSGKTPILVATDV
AARGLDIPDVSHVVNFDLPNDIDDYVHRIGRTGRAGKTGLATAFFSDNNTSIAKSLADLM
QEANQEVPAWLTRYASRASYGGGKNRRSGGRFGGRDFRKDNSYGGGGGGGYGGGGGGYGG
GGGGYGGGSYGGGYGGGGGGYGGGGGAPSAWD
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgagatcttcttgggcagactctgttgacaatacagcttcaggctccgacaacaatgga
gttggtggagctccaggagctggaggtaagcctgcttatgttccacctcatctccgtaac
aggccgcctgcacagatgcaggcggctccctcagccacatcacagagtggtgcaccacct
gcaaatgataggttaggatatggtggacaaacaagcggatcacgatgggctgctcctagg
caggattacagtaggccaggatatggtactggcggccgtggtggtggtggtggagggggt
tggggaaacagaggtggtagttggggtggtggtggtggtagagacatggaggttaatcca
tttggtaatgaggatatagatagtgctgaagaaatcacaactgaacaagaaaacaatggt
atcaattttgatgcttatgaggatattcctgtggaaactagtggtgaaaatgtgccacct
ccagttaacacatttgcagaaatagacttaggggaggctctgaatcttaacattagaagg
tgcaaatatgtcaaacctacccctgtccaacgttacaccattcctatttctcttgctgga
cgcgatttaatggcatgtgctcaaactggatccgggaaaactgcagcattttgcttccct
ataatcagtgggattatgaggggacaatttgcacaaagaccacgtggcacaagaactgtt
ttcccccttgccctgattttatctcctacaagggaactctcctgtcagatacatgaggag
gctcggaagttttcttatcagacaggtgtcaaggtggtggttgtttatggtggagcaccg
attaatcaacagttaagagagctcgagagaggagttgatatacttgtcgccactccagga
aggttggttgatttgctggaaagggcaaaagtgtcattgcaaatgatacgatatctagct
cttgatgaggcagatagaatgttggatatgggatttgagcctcaaatcagaaaaatagtg
gagcaaactgacatgcctccaccaggtcaaagacaaactatgctcttcagtgctacattt
cctagagaaatccagagactggcatctgattttctttcaaattacatatttttaaccgtg
ggtcgtgttgggtcaagtaccgatttaattgttcaaagggtggaatttgttcaagaagtt
gacaaaagaagccatcttatggacctccttcatgcgcaaaaggaaaatgattctaatacc
aaggctcttacattagtttttgtggagacaaaaaaaggagcagattcactcgaacattgg
ctctatagtaatggcttcccagctactaccatccatggtgacagatcacagccggaaagg
gagcaggcattgcgatcattcaaaagtgggaaaacaccgattttggtggcgactgacgtg
gcggcacgtggtctggatatccctgatgtgtcgcatgtggtcaactttgaccttcctaat
gacattgatgactacgtacacagaataggacgaacagggcgagctggcaagacgggattg
gccacagctttcttcagtgacaacaatacatccatagcaaaatcattagccgacttaatg
caagaagccaaccaggaagtgccagcttggcttactcggtatgccagccgtgcgtcttac
ggtgggggtaagaacaggcgatccggtggacgctttggtggccgtgattttaggaaggat
aactcctatggcggcggcggtggtggcggttatggtggaggtggtggcggttatgggggt
ggtggtggcggttatggtggtggcagttatggtggtggttatggaggcggtggtggtgga
tatggtggcggtggtggtgcaccgagtgcttgggattag
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