Lactuca sativa (garden lettuce): 111905325
Help
Entry
111905325 CDS
T05352
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111905325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111905325
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111905325
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111905325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
111905325
NCBI-ProteinID:
XP_023756786
LinkDB
All DBs
Position
6:53509593..53513925
Genome browser
AA seq
809 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDIFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRHRD
QIKTWIQFTEIKDKKALMDARKLIEKEMERFKICEKETKTKAFSKEGLGQQPKTDPKEKA
KSETRDWLNNTVSELESQIDSFEAEMEGLSVKKGKARPPRLTHLESSINRHKAHIMKLEL
ILRLLDNDELSPEQVNDVKDFLDDYVERNQEAFDDFDDVDMLYNTLPLDKVESLEDLVTI
CPPGIVKGVGATAAVSSIKSTLSTSAQSSATITSPIQQGDSVQEQVDEVAPPQDTISELG
PQTPSPKIIPISPAPPTSERPPATPVAIAGPNPVKGILDNTTLSVPSTPINTSTKEEELS
TFPTRKPSSSLRSGVTNLPSLTIPVTSRISVSSSGSLTTPLSEASMSGMMQSLVSPLSSR
ILLPQVGKTSESVDGGESGEGGGVTGRVFSSPSGVPGIQWRPGIGNPFQSQHEGFCGRAE
IAPDQREKFLQRFQQVQQQQQQQAPKQFTPLQFNSQTSGAPLSLPPQIVGPTAMSALQPS
LTHSQSGQHILMSTVDVGHVKAEELQNDDSAPDSAPVRETDSKVSMSFPSDTVAEPAQAA
RDIELSPGQPLQSTALALGVIGRRSVSEVGAIGDTLSGGGTFLPLDAPHDQQSTFQLLDS
GFYKLPQPKDSERAKSYTPRHPAATPQFYPQVQAPIVNNPAFWERLGSDNIGTDTLFFAF
YYQQKSYQQYLAAKELKKQSWRYHKKYNTWFQRHEEPKIATDDYEQGTYVYFDFHMATDT
DHHLLQHGWCQRIKTEFKFEYNFLEDELV
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtagaaagcttcaaggcgagatcgatcgggttttgaagaaagtccaggaa
ggagtcgatattttcgacagtatttggaacaaggtttacgatactgacaatgccaatcag
aaggagaaatttgaagccgatttgaagaaggagatcaagaaacttcagaggcacagagac
cagattaagacatggatacagttcaccgagatcaaggataaaaaggctctaatggatgct
cggaagcttattgaaaaagaaatggaacggtttaagatatgtgaaaaggaaacaaagaca
aaagcattctccaaggaaggccttggacagcagcctaaaacagatccaaaggagaaagca
aagtcagagactagagattggttgaacaatacagtgtctgagcttgaatctcaaattgat
agttttgaagctgagatggaggggttatctgttaaaaaagggaaagcaaggccaccaaga
ttgactcatttggaatcatcaatcaatcgacacaaagctcatataatgaagttagagttg
attttaagattgctggataatgatgagttgagccctgaacaagtcaatgatgttaaagat
ttcttggatgattatgtggaacgaaatcaggaagcttttgatgactttgatgatgtggac
atgttatacaacaccttacctttggacaaggtagagtcacttgaagatctagtcaccatt
tgtccacctggcattgttaagggtgttggtgctacagctgctgtttcaagcataaaatca
accttatccacttcagctcagtcatcggctacaattacatctcctattcaacagggggat
tcagtacaggagcaggttgatgaggtggcgcctccccaagacactatctcagagttaggg
ccacaaactccatctccaaaaattattccaatttcgcccgcccctccaacatcagaaaga
ccccctgctacccctgttgccattgcaggtccaaatcctgtcaagggtattttggacaat
acaaccttatctgttccttcaacaccaataaacacttccactaaggaagaagagctttcc
acctttcccactcgtaaaccatcatcatcccttagaagtggtgtgaccaatttaccctcc
ctcaccatcccagtcacctccagaatcagtgtttccagcagtggatctttaacaactcca
ttgtcagaagcatccatgagtggaatgatgcaatcattggtttctcctttaagtagtaga
atactattaccacaagttgggaaaaccagtgaaagtgttgatggtggggagagtggtgag
ggtggtggtgtgacagggagggtgttttcatcaccttctggagttcctggaatacaatgg
cgacctggaattggaaatccattccaaagtcaacatgaagggttttgtggaagagcagaa
attgcaccagaccaaagggagaagtttttacaaagattccaacaagtgcagcagcagcag
caacaacaagctccaaagcaatttacaccattgcagttcaactctcaaacatcaggggca
ccgctatcactacctcctcaaattgtgggacccactgccatgtcagcactacaaccaagt
ttgacccattcacagtccggtcaacacatactcatgtcaaccgtagatgttggccatgtg
aaagctgaagagctgcaaaatgacgattctgcccctgattctgctcctgtccgtgaaacc
gattcaaaggtgtcaatgtcatttccatcagatacggtggccgagcctgcccaagctgcc
cgagatatcgaactctctcccgggcagcctttacagtcgactgcccttgcccttggggtt
attggtagaagaagtgtttctgaggttggtgcaattggagataccctcagtggtggtggg
acatttttgcccttggatgcccctcatgatcagcaatccacctttcagttgcttgattct
ggcttttataaactcccacaacccaaagattctgaacgtgctaaaagctacactcctagg
catccagctgcgaccccacaattctaccctcaagtgcaggctccaattgttaataatcca
gccttttgggaaagacttggatctgataacattggaaccgatactctgttttttgcattt
tattatcaacagaagagttaccagcaatatttagctgcaaaagagctgaaaaagcaatca
tggagataccataaaaagtacaacacatggtttcaaaggcatgaggagccaaaaattgct
actgatgactatgaacaagggacgtatgtgtacttcgattttcatatggccactgataca
gatcatcacctcctgcaacatggatggtgtcaaagaatcaagaccgaattcaaatttgag
tataattttcttgaagatgaactcgtgtaa
DBGET
integrated database retrieval system
