Lactuca sativa (garden lettuce): 111905598
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Entry
111905598 CDS
T05352
Name
(RefSeq) WD-40 repeat-containing protein MSI4
KO
K10752
histone-binding protein RBBP4
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03082
ATP-dependent chromatin remodeling
lsv03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111905598
03083 Polycomb repressive complex
111905598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsv03036
]
111905598
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
111905598
Histone modification proteins
HAT complexes
HATB complex
111905598
HDAC complexes
Sin3A-HDAC complex
111905598
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
111905598
PRC2.2
111905598
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
111905598
Heterochromatin formation proteins
Other heterochromatin formation proteins
111905598
Chromatin remodeling factors
NuRD complex
111905598
NuRF complex
111905598
NuRF complex (fruit fly)
111905598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
CAF1C_H4-bd
WD40_Prp19
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML
WDR55
EIF3I
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
eIF2A
Beta-prop_NUP159_NUP214
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
111905598
NCBI-ProteinID:
XP_023757064
LinkDB
All DBs
Position
7:53098656..53101881
Genome browser
AA seq
494 aa
AA seq
DB search
MEEASSPLSQPKKRGRPKGSKKVIAEEREISSPKMRDRATAAGNKKAAVVDDKYNNWKFV
VPILYDWLANHNLVWPSLSCRWGPLLEQSKNKSRQRLYLSEQTDGSVPNTLVIATCDVVK
PKVAAAEHISQFNEETRSPFVKKYKTIIHPGEVNRIRELPQNKNIVATHTDCPEVLIWDI
EAQPNRHALLGAAVSHADLVLTGHADNAEFALSMCPTEPYVLSGGKDKLVVLWSIHDHIS
TLVGESNTTNSSGSIVKTSDNASLGPRGIFEGHTDTVEDVQFCPTSTQEFCSVGDDSCLI
LWDARVGTNPITKVEKAHNADVHCVDWSPHDANYILTGSADHSVCMFDRRNLVSDGVGSP
VHKFEEHKAPVLCVQWCPDKPSVFGSSAEDGCVNIWDYEQVGQKIERGTRSANYAQGLFF
KHCGHRDKVVDFHWNAYDPWTVVSVSDDVECSSGGGTLQIWRMSDLIYRPRDEVLSELEA
FKAHVASCGPRASS
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagcttcgtcgccattgtcgcaacctaaaaagagaggaaggccgaagggctcc
aagaaggtcatcgctgaagaaagagaaatttcaagtcctaagatgagagacagagctaca
gctgccggaaacaaaaaggccgccgttgtcgacgataagtacaataactggaagtttgta
gtccccattctgtatgactggcttgctaatcacaacctcgtttggccttctctctcttgc
cgatggggtccgctgctggaacaatcgaagaacaagagtaggcagaggttgtatctttcg
gaacagactgatggcagtgttccaaatacactagtaatagcaacatgtgatgtagtgaag
ccaaaagttgctgcagcagaacacatatctcagttcaatgaagaaactcgctctccattt
gtaaaaaagtacaaaaccatcattcatcctggagaggtgaacagaattcgggaacttcca
caaaacaagaacattgttgctacacatacagattgcccagaggtcctcatttgggatatt
gaagcacaacctaatcgtcatgctcttcttggagctgctgtatctcatgctgatttggtg
cttacaggacatgcagataatgcagaatttgctctttcaatgtgtccaactgaaccttat
gtactctctggaggaaaggataaactagttgttttatggagtattcatgatcatatatca
acattggttggagaatcaaacacaaccaattcttcagggtcaattgtgaaaacttctgat
aatgcttctcttggcccacgtgggatctttgaagggcatacagatacagttgaagatgtc
cagttttgtcccacaagtacacaggaattctgtagtgttggagatgattcttgcttgata
ctttgggatgcaagagttggaacaaatccaatcacaaaggttgaaaaagcacataatgct
gatgttcattgcgttgattggagtcctcatgatgcaaactatattctaacagggtcagct
gaccattctgtttgtatgtttgaccggaggaatttggtttctgatggagttggatctcct
gttcataaatttgaagaacacaaagctcctgttctttgtgttcagtggtgtccagacaag
ccttctgtgtttgggagttcagctgaggatggttgtgttaatatttgggattatgaacag
gttggacaaaagatagaacgcggaacaagatctgcaaactatgctcaagggttgttcttt
aaacactgcggacacagggacaaagtggtggactttcattggaatgcttatgatccatgg
actgttgtgagtgtatcggatgatgttgaatgctcaagtggtggtgggacccttcagata
tggcgcatgagtgatttgatatacagaccaagggatgaagtgttgagtgagttagaggct
tttaaggctcatgttgctagttgtggtccaagggcatcatcatag
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integrated database retrieval system
