Lactuca sativa (garden lettuce): 111906008
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Entry
111906008 CDS
T05352
Name
(RefSeq) replication factor C subunit 3
KO
K10756
replication factor C subunit 3/5
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03030
DNA replication
lsv03410
Base excision repair
lsv03420
Nucleotide excision repair
lsv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111906008
03410 Base excision repair
111906008
03420 Nucleotide excision repair
111906008
03430 Mismatch repair
111906008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsv03032
]
111906008
03036 Chromosome and associated proteins [BR:
lsv03036
]
111906008
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111906008
DNA replication proteins [BR:
lsv03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111906008
DNA Replication Termination Factors
ELG1-RFC complex
111906008
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
111906008
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111906008
Check point factors
HRAD17(Rad24)-RFC complex
111906008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
111906008
NCBI-ProteinID:
XP_023757516
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All DBs
Position
7:14055880..14059924
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AA seq
636 aa
AA seq
DB search
MKSPHVSPEPPKFLPDDLSNASQNSSSRSSKFAWPGKVPHFMKQKKTSTLTRESLQVLAA
VEDKKYYSSPYYKGLLNTEKVPGTSTSPEAENSTATATATGVPHEIQNWNLSSPYYKGLL
YTEKVPGTSTNPEVENIASGGSTHDLQSLDPSSPYYRGLLYRATSPDRESQTSSRTSFSV
RMSEWSASCFSFKTKDEKDPTMIKVYSTENSNEESLRERVSEPSLSPPTPAAMVVPPSSP
PLLPPAAKKMVVNAKDTSELKEEKYLWADRYRPVALKDFICNKDKAIELQHTINEDECRH
FIFEGQAGVGKRTMIWALLREAYGPDKVQARDECKTFNLKGEDVSSIMVNVKESSQHVEI
NLSELKGFEKHVIVELIKETNNLTNKTGLRCSNDNCRAIILHEADKLSTDALLYIRWVIE
RYRGCHKIFFCCQDASKLQPLKNICKLVQLLPPSNKEIVQVLEFIAKNEEIELPNKLAER
IAVSSKNNLRQAIRSFEATSQNNSLLEEDQVILTGWEDDIANIAKSIVEKQSPKQLYDIR
RKLQNLIDHSVPPEFIFETLAVELKKNVEESMHKQIEKTYKEYSGADKHRHANDERKKLI
HQFMCIEEFIAKFMSCYKNHLAKKAIDMTEIKEETT
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcccccacgtctcccccgaaccccctaaatttttacctgacgacctctcaaat
gcgtcgcaaaactcctcttctcgttcctccaagttcgcttggcccggaaaagtccctcat
ttcatgaaacaaaaaaagacttcgaccttaacacgagaaagcctccaagtcttggccgct
gtagaagacaaaaagtattatagcagcccttattacaaagggctgctaaatactgaaaag
gtccccggtacaagtacaagtcccgaagcagagaatagcactgctactgctaccgctacc
ggtgtaccgcatgagatccaaaactggaacttgtctagcccttattataaagggctactg
tacacggaaaaagttccgggtacaagtacaaatccggaagtagagaatattgcttcaggt
ggatcaacacatgatcttcagagcttggacccttcaagcccttattacagagggctcctg
taccgggctactagcccggatcgggagagtcaaacgagttcaagaacgagtttttcggtt
aggatgtcggaatggagtgcatcttgtttttcttttaagacaaaagatgagaaagatccg
acaatgataaaagtttactctaccgaaaattcgaatgaggagtccttgagggagagagta
tcagagccgtcgttatcgccacctacaccagcggctatggtggtgccaccatcatcgcca
ccgttgctgccgccggccgccaaaaagatggttgtgaatgcaaaagatacgagtgagttg
aaggaggagaagtatttatgggcggatagataccggccggtagctctcaaggattttatt
tgcaataaggacaaagccattgagttgcaacatacgataaatgaagatgagtgtcgccac
tttatatttgaaggacaagcgggtgttgggaaaaggacaatgatatgggctttgcttcgc
gaagcatatggacccgataaagtgcaggcacgagatgaatgcaaaacgtttaacttgaag
ggggaagacgtaagcagtattatggtgaatgtgaaggaatcgtctcaacatgtagaaata
aacctgtctgaactaaaaggatttgagaagcatgtcatcgttgaactcatcaaagagaca
aataacttaaccaacaaaacggggctacgatgcagcaatgataactgtagagccatcatt
ttgcatgaagcagacaagctgtcaacggatgcattgctgtatataagatgggttatagag
cgatatagaggatgtcataaaatcttcttttgttgtcaagatgcttcaaagcttcaaccc
cttaaaaacatttgcaaattggtccaactccttccaccttctaataaagagattgttcaa
gtcctggagttcatagcaaaaaacgaagaaatagaattgccaaataaattggctgaaaga
atagcagttagttccaagaataacttgcgacaagctattcgctcctttgaagctacctca
caaaataattcgcttttggaggaagatcaagtaatcttgactgggtgggaagatgatatt
gcaaatattgccaaaagtatagtagaaaagcaaagccccaaacagctatatgacattcgt
cgaaaacttcaaaatctcatagatcatagtgtgccacctgagttcatctttgaaactcta
gcagttgaactgaagaagaatgttgaggagtcgatgcataagcagattgaaaagacatat
aaggaatatagcggagctgataaacatagacacgcaaatgatgaaaggaaaaagcttatc
catcaattcatgtgtatcgaagaattcatagcaaaattcatgagctgctacaaaaatcat
ctggctaagaaggcaatagacatgactgaaataaaagaagagacaacatga
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