Lactuca sativa (garden lettuce): 111906018
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Entry
111906018 CDS
T05352
Name
(RefSeq) nuclear pore complex protein NUP62
KO
K14306
nuclear pore complex protein Nup62
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111906018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111906018
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
111906018
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Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
ATG17_like
FapA
Nucleoporin_FG
HK_sensor_dom_bact
CobU
Prefoldin_2
COG3_N
Motif
Other DBs
NCBI-GeneID:
111906018
NCBI-ProteinID:
XP_023757525
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All DBs
Position
7:complement(13396543..13400764)
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AA seq
672 aa
AA seq
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MSGFSFSTSLSTSSSSSSPSPFSFASSSSPSPFSFSNPASSPSLFGSSTSSNPTFGAPSS
STPSFGFSFASSSSSTPSSAAPSASAPSPTFGFGASSAAATGSTLFGTSSPAGASPFGGS
GLFGSSSSSSGTTTTTTSLFGSTSTFGSGSIFGASSASASSTTTPTAVSSPFSTGLFGSS
STSGTSTPIFSSASSGAASSSSAPSLPNLFGSASSSAAPSFSNFGASSSSSMSSSITTPP
ASSAAPGFSFLNASSSSSVTSSAASAPGFSFPSATASAPSFSFASSSAAPSTTTLSAGSS
SSPTSSFSFANVTASSAAQSSTGLALNTKTASTTVATTTTSSASTSASSTLSFPSFVTSS
SSATPATGSVPSFASPAIGASSSGTSSSFLGFQTSSKTTAATTPSSQPQSTAASSLFGIP
AATTTTSTITTTTAQTSSSLVVASSSGTSTSVSTAVVPAPKLPSEITGKTVEEIIKEWNV
ELQERTGKFRKQANAIADWDRRILHNRDVLLKLEAEVAKVVETQSNLERQLELIETHQQE
VDKSLQSVEEEAERIYKDEHGLLLDDEAASTRDAMYEQAEFIEREMEQMTEQIKSVIQTL
NANQAGEVEASDGMGMGMAPLDVVVRILNNQLSSLMWIDEKAEEFSSRIQKLAKQGSAAD
RELMAPKFWLSR
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcttctccttctctaccagtttatcaacctcctcatcatcttcatccccatca
ccgttttcatttgcatcgtcttcatctccatctccgttctcattctcaaaccctgcctca
tccccttcgctatttggttcatctacatcctcaaatccgacattcggagcgccttcatcg
tcaactccttcgtttgggttttcgtttgcatcttcgtcatcttctacgccgtcttccgct
gcaccctccgcctccgctccatcaccaacttttggtttcggggcttcttccgctgctgca
accggctctacactgttcggtacatcgtctcctgccggggcatcaccgtttggtggatct
ggtttgtttggatcaagttctagttctagtggcactaccaccaccactacaagtttattc
ggttctacttccacttttggatccggtagcatatttggggcttcttcagcttcagcttca
agcacaactacacctactgcggttagttcgcctttttctacaggcttatttggatcatca
tctacttctggaacatcaactccaattttttcttcagcgtcatctggggctgcttcatca
tcatcagccccatctttacctaatttatttggctcagcttcttcatcagcagccccttct
ttttctaattttggtgcatcatcatctagctcaatgtcaagttcaattacaacaccaccg
gcttcatctgcagcaccagggttttcgttcctcaacgcttcgagctccagctcagtcact
tcttccgctgcttcagctccgggtttctcatttccaagtgcaaccgcctctgcaccctcg
ttttcgtttgcctccagttcagccgcgccatctactaccactttgtctgctggttcatcg
tcaagccccacctctagcttctcttttgcgaatgtaacagcctcttctgcggctcaatca
tctacggggctggctttaaatacaaaaactgcttctacgacagtagctacaacgactact
tctagtgcttccacatctgccagtagcactctgtcgttcccttcatttgttacatcttca
tctagtgctacaccagctactggatctgttcccagtttcgcaagccctgccattggtgct
tcttcttccggaacttcaagttcttttttgggatttcaaacttcctctaagactacagct
gctactaccccatcttcccaaccgcaatctacagctgcttcatctttgtttggtattcct
gcagccacaacaaccacttcaaccattacaaccactactgctcaaacatcatcctcactt
gttgtagcttccagtagcgggacaagtacgagtgtgagcacagctgttgtccctgcacca
aagttaccatctgaaattactggaaagactgttgaggagatcatcaaggagtggaatgtg
gagctccaggaaagaaccggaaagttccggaagcaagctaatgcaattgctgactgggac
aggagaatcttgcacaaccgggatgttcttcttaaacttgaggcagaagttgctaaagtt
gttgagacccaatcaaaccttgagcgccagctggaacttatcgagactcatcagcaagag
gttgacaagtcgttacaaagtgtggaagaagaagctgagcgaatatacaaagatgaacat
ggcttacttcttgatgatgaagcagcttcaaccagagatgcaatgtatgagcaggctgaa
ttcatagagagagaaatggaacagatgactgaacaaataaagtcggttattcagactctt
aatgccaatcaggcgggagaagttgaagcaagtgatggtatgggtatgggtatggcccca
ctggatgtggtggttcggatccttaacaatcaactcagttcattaatgtggatcgacgaa
aaggctgaagaattctcttcgcgtattcaaaagctggccaagcaaggatctgctgctgac
cgggaactcatggccccaaaattttggctgtctcgctga
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