KEGG   Lactuca sativa (garden lettuce): 111906088
Entry
111906088         CDS       T05352                                 
Name
(RefSeq) RNA polymerase sigma factor sigC
  KO
K03093  RNA polymerase sigma-I factor
Organism
lsv  Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lsv03021]
    111906088
Transcription machinery [BR:lsv03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     111906088
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r3 HTH_31 DUF2992 HTH_23
Other DBs
NCBI-GeneID: 111906088
NCBI-ProteinID: XP_023757598
LinkDB
Position
6:complement(18130028..18132984)
AA seq 525 aa
MGVGFRINLKWVLSVQPRLSSNSPSLSSTYASFKSKDIHYDLARASLSMESETSYSDPLS
GRTCSSTSRILDIDYSETRNNVKNLLREDKLTFLTSLQANKISQYRLLLENLVALEDTFA
DSDVVTLEQDILFQLEKLGALKFLHTSFSQIPKHPFPTNSITEKTVKPVVPSTRKIKRKS
QRERTSTKANDVCMVEFHSQPITRKNSRRVNFSSKRSSNSKIGKLKFTRNEAELSQGVKM
VAELERIRMILEEEVGPRVSFSSWAEAAGVDKKELLENLQFGWCCRDELLRSTRSLVIYL
SKNYNGQGIAFKDLIQAGNVGVLQGAERFDRSRGYKFSTYVQYWIKKSLLMLLSRHAREI
RIPFTMSKAISRIQKARKALDNGDGRCPNACEIAKFTGLSLAKIESANKCLRVVGSINQP
FGQGIDAKFWECTPDLTTMTPEENLMKNYMINEIYSRMKDLDSRERKVLALRFGLKGYQR
KTLEEIGRLYGVSKEWIRRIERRALTKLKVDDEETLQSFRHYLYM
NT seq 1578 nt   +upstreamnt  +downstreamnt
atgggtgtgggtttcaggatcaacttgaaatgggttctttctgttcaacctcgtctctct
tccaactcgccatctttgtcatccacatatgcatcctttaaaagcaaagacatccattat
gatttagcgagggcatctctatcaatggaaagtgagacttcttacagtgatcctcttagt
ggaagaacatgttcatctacttcccgaatcttggacattgattactcagaaactcgcaat
aatgttaaaaatttgttacgagaggataaattaacattccttacaagcttacaagcaaac
aagatatcacaatatagattactcttggaaaatcttgttgcattggaggatacatttgct
gattcagatgtggtaacactagaacaagacatattgtttcaattagaaaagcttggcgct
ttaaagtttttgcatacttctttctctcaaatacccaaacacccatttccaactaactct
ataaccgaaaaaactgtcaagcccgttgtcccatctacaagaaagataaaaagaaagtca
caaagagaaagaacatcaacaaaagccaatgatgtttgtatggtggaatttcactcacaa
cccatcacccgtaaaaattcaagacgtgtcaacttttcttcaaaaagatcatcaaattct
aaaattggaaaactcaaattcactagaaacgaggcagagctatcgcaaggtgttaagatg
gttgctgaattggagaggattagaatgattttagaagaagaagtggggcccagggttagt
tttagtagttgggcagaagctgcaggagttgacaagaaagagttgcttgaaaacttgcaa
ttcgggtggtgttgtagggatgagcttttgagaagtacacgatctttggttatctatctt
tcaaagaattacaatggtcaaggaatagccttcaaagatttaatccaggcaggaaatgtt
ggtgttcttcaaggtgcagaacggtttgaccgaagtagaggatacaaattctcaacttat
gttcagtattggataaaaaaatcattgctaatgttgctatcacgtcatgctagagagata
cgaattcctttcacaatgagcaaggctataagtcggatacaaaaagctcgaaaagcactc
gataatggtgatggaagatgcccaaatgcttgtgagattgccaaattcacaggtctttca
ttggctaagattgaatctgctaacaaatgccttagagttgttggctccatcaatcaacca
tttggacagggtattgatgcaaagttttgggaatgtacacctgatttgacgacaatgact
cctgaagaaaacttaatgaagaattatatgattaatgaaatatatagtcggatgaaagat
ttggacagtagggagaggaaagtgttggctttaagatttgggcttaaagggtatcaaagg
aagacacttgaagaaattggaaggttgtatggtgtaagcaaagaatggattcgaagaata
gaaagaagagctttaacaaaactaaaagttgacgatgaagaaactttacaaagttttaga
cattatctgtacatgtaa

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