Lactuca sativa (garden lettuce): 111906088
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Entry
111906088 CDS
T05352
Name
(RefSeq) RNA polymerase sigma factor sigC
KO
K03093
RNA polymerase sigma-I factor
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsv03021
]
111906088
Transcription machinery [BR:
lsv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
111906088
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
HTH_31
DUF2992
HTH_23
Motif
Other DBs
NCBI-GeneID:
111906088
NCBI-ProteinID:
XP_023757598
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Position
6:complement(18130028..18132984)
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AA seq
525 aa
AA seq
DB search
MGVGFRINLKWVLSVQPRLSSNSPSLSSTYASFKSKDIHYDLARASLSMESETSYSDPLS
GRTCSSTSRILDIDYSETRNNVKNLLREDKLTFLTSLQANKISQYRLLLENLVALEDTFA
DSDVVTLEQDILFQLEKLGALKFLHTSFSQIPKHPFPTNSITEKTVKPVVPSTRKIKRKS
QRERTSTKANDVCMVEFHSQPITRKNSRRVNFSSKRSSNSKIGKLKFTRNEAELSQGVKM
VAELERIRMILEEEVGPRVSFSSWAEAAGVDKKELLENLQFGWCCRDELLRSTRSLVIYL
SKNYNGQGIAFKDLIQAGNVGVLQGAERFDRSRGYKFSTYVQYWIKKSLLMLLSRHAREI
RIPFTMSKAISRIQKARKALDNGDGRCPNACEIAKFTGLSLAKIESANKCLRVVGSINQP
FGQGIDAKFWECTPDLTTMTPEENLMKNYMINEIYSRMKDLDSRERKVLALRFGLKGYQR
KTLEEIGRLYGVSKEWIRRIERRALTKLKVDDEETLQSFRHYLYM
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtgggtttcaggatcaacttgaaatgggttctttctgttcaacctcgtctctct
tccaactcgccatctttgtcatccacatatgcatcctttaaaagcaaagacatccattat
gatttagcgagggcatctctatcaatggaaagtgagacttcttacagtgatcctcttagt
ggaagaacatgttcatctacttcccgaatcttggacattgattactcagaaactcgcaat
aatgttaaaaatttgttacgagaggataaattaacattccttacaagcttacaagcaaac
aagatatcacaatatagattactcttggaaaatcttgttgcattggaggatacatttgct
gattcagatgtggtaacactagaacaagacatattgtttcaattagaaaagcttggcgct
ttaaagtttttgcatacttctttctctcaaatacccaaacacccatttccaactaactct
ataaccgaaaaaactgtcaagcccgttgtcccatctacaagaaagataaaaagaaagtca
caaagagaaagaacatcaacaaaagccaatgatgtttgtatggtggaatttcactcacaa
cccatcacccgtaaaaattcaagacgtgtcaacttttcttcaaaaagatcatcaaattct
aaaattggaaaactcaaattcactagaaacgaggcagagctatcgcaaggtgttaagatg
gttgctgaattggagaggattagaatgattttagaagaagaagtggggcccagggttagt
tttagtagttgggcagaagctgcaggagttgacaagaaagagttgcttgaaaacttgcaa
ttcgggtggtgttgtagggatgagcttttgagaagtacacgatctttggttatctatctt
tcaaagaattacaatggtcaaggaatagccttcaaagatttaatccaggcaggaaatgtt
ggtgttcttcaaggtgcagaacggtttgaccgaagtagaggatacaaattctcaacttat
gttcagtattggataaaaaaatcattgctaatgttgctatcacgtcatgctagagagata
cgaattcctttcacaatgagcaaggctataagtcggatacaaaaagctcgaaaagcactc
gataatggtgatggaagatgcccaaatgcttgtgagattgccaaattcacaggtctttca
ttggctaagattgaatctgctaacaaatgccttagagttgttggctccatcaatcaacca
tttggacagggtattgatgcaaagttttgggaatgtacacctgatttgacgacaatgact
cctgaagaaaacttaatgaagaattatatgattaatgaaatatatagtcggatgaaagat
ttggacagtagggagaggaaagtgttggctttaagatttgggcttaaagggtatcaaagg
aagacacttgaagaaattggaaggttgtatggtgtaagcaaagaatggattcgaagaata
gaaagaagagctttaacaaaactaaaagttgacgatgaagaaactttacaaagttttaga
cattatctgtacatgtaa
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