Lactuca sativa (garden lettuce): 111906373
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Entry
111906373 CDS
T05352
Name
(RefSeq) ATP-dependent RNA helicase DEAH13
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lsv03009
]
111906373
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111906373
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
90S particles
Helicases
111906373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DHX37_C
DEAD
HA2_N
AAA_22
HTH_51
ATPase
nSTAND3
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
111906373
NCBI-ProteinID:
XP_023757901
LinkDB
All DBs
Position
3:complement(316511393..316518601)
Genome browser
AA seq
1252 aa
AA seq
DB search
MEMIGDSNMIMMTQKKKKKSKERSLKHGPLKSKKKEKLKPSNSQKRKLRKLEEEKEKSAM
LSKSLETLDKYKLQEDAYSLMWSSSNLGQVETMREKRRREVQFAKTGLVLQHSDWPSKRR
CNESDSSVIHSSDQVDNENVSTQPMNTDIEIPNISPPPSPEAPSTKGAAELDPKSVVDHE
HTNPSMTEDHEDSLATTSHRRSMLEEVDAKPKGVAPSRPKHVVVGVSRPKEVERNRMDLP
IVMMEQEIMEAIYENISVIICGETGCGKTTQVPQFLYEAGFGSKSSGIIGVTQPRRVAVL
ATARRVAFELGLGLGKEVGFQVRHDKRIGDNCSIKFMTDGILLRELQNDFLLKRYSTIIL
DEAHERSLNTDILTGMLSRIIVERLKIHEQQKAYEASTGKTISPEKKIFPLRLILMSATM
RVEEFVSGGKSKIFANPPPVIQVPSRQYPVTTHFSKRTDVVDYIGQAYKKILSIHKRLPS
GGILVFVTGQREVEYLCRKLRKASLQITNNSNSNLNLNNKVVVSQDFDLKEIDEAFKMEE
QTDNDEGDDDCDLSDDDDDESDEESDLDSVNDNDVLGENENFASLKAAFEALSGKKTSCE
SDPKQSDSEKEKEKEKEKKDDGSRKGPGGLSVLPLYAMLPGSAQLRVFEDMKEGERLVVV
ATNVAETSLTIPGIKYVVDTGREKVKNYNPSNGMETYEVQWISKASAAQRAGRAGRTAPG
HCYRLYSSAVFNNIFPDFSTAEILKIPVDGVVLLMKSMGIKEITKFPFPTPPEAKALVEA
EVCLKSLEALDCDEKLTPLGKAMSHYPMSPRHSRMLLTVIQILNNKGRGSSTRQNLILGY
ALAAAAALSLSNPFVMQFEGGDENSSENVIINKDEKKKKKKLKEASKTSRAKFSNPTSDA
LTVAYALQCFEQSENQLQFCEEHSLHLKTMEEMSKLRKQLLHLVFNQKPCDTDTQSQSQS
DLLWNHSSIEDVEHAWMVSTNSNNKHPLMLNEEELLGQAICAGWADRVARRVRGISGLSE
EDRKVSATRYEAHKVNETVFLHRWSSVSRTAPEFLVFSELVERKRAYIHGATRVKPEWLA
RFSTYLCSFSAPLTEPKPYYNPQTDQVYNWVSTSFGDHLWQLPLHSLPVKDERVEVRVSV
FCYSLLEGIVLPCVKRVRESMAAAPSSVLKPETAGHKRFGKIIYELKKRNIHSCDMLRKA
WDENRRILYQSLLEWFREGFEFDDLWEVMQREVRLDPQERFAKTKKKSMLKR
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atggagatgataggcgatagcaacatgatcatgatgacacaaaagaagaagaagaaaagt
aaagagagaagtttgaagcatggacctctaaagtcaaagaaaaaggaaaaacttaaacca
agcaactcccagaagagaaagctgaggaaacttgaggaggaaaaggagaaatctgctatg
ttatctaaaagcttagagacattagataaatacaaacttcaagaggatgcttattcactc
atgtggtcttcaagcaatttgggccaggtagaaactatgcgtgagaaacgcagaagagaa
gtgcagtttgccaagacaggtttggtgctgcaacacagtgattggccttcaaaaagaaga
tgcaacgaaagtgattcaagtgtaattcactcctctgaccaagttgacaatgagaatgtg
tctactcaacccatgaacacagatattgaaatcccaaatatcagtccaccaccttctcca
gaagctccatctaccaaaggagctgctgaattagaccctaagagtgttgttgatcatgag
cataccaacccatctatgacagaagatcatgaagattcattggcaacaactagccatcgt
agaagcatgttagaggaggtagatgcaaagccaaagggcgtggctccttcacgaccgaaa
catgtagtggttggtgtaagtaggccgaaggaggttgaaaggaataggatggatcttcct
atagtgatgatggagcaggagattatggaagcaatatatgagaatatcagtgtcatcata
tgtggagaaacagggtgtggtaagactacacaagtccctcagtttttatacgaagctgga
tttggttcaaaaagcagcggtattattggcgttacacaaccgaggcgtgtggctgtgctt
gcaactgcaaggcgggtggcatttgagcttgggcttggcctagggaaggaggttgggttc
caagttaggcatgacaagaggattggggacaactgctctatcaagttcatgactgatgga
atattgcttagagaattacagaatgattttttgttgaagcgatactcaactataatattg
gatgaggctcatgagaggagtctgaatacagacatacttactgggatgctatctcgcatc
atagtcgaacgcctgaaaatacatgaacagcaaaaagcttatgaggcttcgacaggaaag
acaattagccctgaaaagaagatttttccattgagactgatactgatgagtgccacgatg
cgggttgaggagtttgtgtctgggggtaaaagtaaaatctttgctaatccgccacctgta
atccaggttccaagtcgacaatatccagtgactacacatttctcaaagagaacagatgtt
gtggactacattgggcaagcatataaaaagattttgtcaattcataagagacttccatct
gggggaatacttgtatttgtcactggacagagggaagtagaatacttgtgtcgtaagctg
cgtaaagcatcacttcagatcaccaataattccaactccaacttaaatttaaataacaaa
gttgttgtctctcaagactttgacttgaaggagatcgatgaagcatttaagatggaggaa
caaacagataatgatgaaggcgatgatgattgtgatttgtcagatgatgatgatgatgaa
tctgatgaagaaagcgatttggattctgttaatgataatgatgtgttaggggaaaatgaa
aattttgcttcactgaaagcagctttcgaagctttgtctgggaaaaaaacaagttgtgaa
tctgatccgaaacaatcagattcagaaaaggaaaaggagaaggaaaaggaaaagaaggat
gatgggtcccgtaagggtcctggtggattgtctgttttgcccctgtatgcgatgcttcct
ggatctgcacagcttcgtgtgtttgaggatatgaaggaaggagagaggttagtggtggtt
gctactaatgttgctgaaacgtctctgacaatcccagggataaagtatgtggtggataca
ggaagggaaaaggttaagaattataatccttcaaatgggatggaaacgtatgaggtgcag
tggataagcaaagcatctgcagctcaacgtgctggaagagctggaagaacagcacctggc
cattgttatcgtctctattcttctgctgtcttcaacaacatattccctgacttttctact
gctgaaatcttaaaaattccggttgatggtgtggttcttctcatgaaatccatgggcatt
aaagagataacaaagttcccgtttcctactcccccggaagctaaagcattggttgaagca
gaggtttgtttaaagtctcttgaagccttggattgtgatgaaaaattaacgcctctagga
aaagctatgtcccattatccaatgagtcctcgtcattcacgcatgcttcttacagtcatt
caaatcctgaacaacaagggaagaggttcatcaacaagacagaacttgattctaggttat
gcacttgcagctgctgcagccttgagcttatcaaatcctttcgtaatgcagtttgaagga
ggagacgaaaactccagtgaaaatgttatcatcaataaggatgaaaaaaagaagaaaaag
aaactcaaagaagcatccaaaacatcccgtgcaaaattctccaaccctacgagtgacgcc
ttaactgtagcttacgcccttcagtgctttgaacaatcagaaaaccagttacaattctgc
gaggagcattcgttacaccttaaaaccatggaggaaatgtcaaagctgagaaagcagctt
ctccatttagtgtttaaccaaaaaccatgtgatactgatacacaatcacaatcacaatcg
gatcttttgtggaatcacagtagtatagaggatgtagaacacgcatggatggtttctacc
aattccaataataagcatccactgatgttgaacgaagaggagcttttggggcaagcgata
tgtgctgggtgggctgatagagttgcgagacgtgtgagagggatttcagggttatcagag
gaagataggaaagtgagtgcaacaagatacgaagcacacaaagtaaacgaaacagtgttc
cttcacagatggtcgtctgtttccagaaccgcccctgagtttttggttttcagtgagctt
gtggagcgtaagcgggcgtatatacatggagccacaagggtaaaaccggaatggcttgcg
agattttctacctatctttgtagtttctctgctccacttacagagcctaagccttattac
aaccctcaaaccgaccaagtctataattgggtgagtacgagttttggtgaccacttatgg
cagctcccgctccacagtttgcctgtgaaagacgagagagttgaagtgagagtgagtgtt
ttctgttattctttgttggaaggtatcgtgttgccatgtgtgaaacgggtgcgtgagtct
atggctgctgcaccttcgagcgtgttgaagccggagactgcagggcataagagatttggg
aaaattatttatgagttgaaaaaaaggaacattcatagttgtgacatgctaaggaaggcc
tgggatgaaaatagaagaatactttatcagtcactcttggagtggtttcgggagggattt
gagtttgatgatttgtgggaggtcatgcagcgagaggtacgtttggatcctcaggaacgc
tttgccaagacaaaaaaaaaaagtatgttgaagagataa
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