Lactuca sativa (garden lettuce): 111906474
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Entry
111906474 CDS
T05352
Name
(RefSeq) formin-like protein 5
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03013
Nucleocytoplasmic transport
lsv03015
mRNA surveillance pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111906474
09122 Translation
03013 Nucleocytoplasmic transport
111906474
03015 mRNA surveillance pathway
111906474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111906474
03041 Spliceosome [BR:
lsv03041
]
111906474
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111906474
Spliceosome [BR:
lsv03041
]
Complex C
Other components
EJC/TREX
111906474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
111906474
NCBI-ProteinID:
XP_023757999
LinkDB
All DBs
Position
2:complement(152792967..152796430)
Genome browser
AA seq
687 aa
AA seq
DB search
MGEKSDTKTVSSPYVVLENRPLDQWKVTELKEELKKRKLMTKGLKEDLVKRLDEAVRSEI
DDAKRNLEDDLNNESHSDDATAVPVVTEDTTDALDNTMGKNEDLGKDVKELNKEKDGNEG
LEKDNVGLDKEKDGNTSVQMEMDMVQADDVLAEKMVTEGGIVSTQVESFQVVEEISVTTT
TKTTVLVSEGTVDEGFNVKESQVVGNNGDSKAESQSPKEEQAEVSNQVTEVSQVISDSIS
VDTTISNSEKNELKDNVIADDVKSEVDVKPEMVLDDSKSEPDDIDNDNVIAADVKSEQVI
ELKEVKMSTNVVVSVEEVDEPLKDKITDESVDICKKSDSGDVGSSEKLNLDRSSGDDSME
EDVQESKQIDSKFTPNEVGDISGKIEVKEDDSVDVMVVDDKNSAPVEDITSTKRKPQILA
ENSEVVKRQRRWNTEQQLTNNHSAVTSPKDTIQTPVKRVFSRSESKIDQELPKERIVPPS
SKTPTNSLRIDNFLRPFTLKAVQELLGKTGTVVSFWMDHIKTHCYVTYASAEEAIETRNA
VCNLQWPVNGGRLLMADFVDPQEVKNRVDPPPPPPPATTMQPPQPSPRLHVQKQQQQQLP
PPPALAAMQPQYPSPRLHVQKQPQQLPPPPPPPVREVAALPPPPVDPPIVTLDDLFRKTR
ATPRIYYLPLSDEQVAAKMKGKAGLKE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaagtctgatactaaaacggtgtcttcaccatatgttgtccttgaaaatcga
ccccttgatcaatggaaagtaactgaattaaaagaggaacttaagaaacggaaactaatg
acaaagggattgaaggaagacctggttaaaaggttggatgaagcagttcgttctgaaata
gatgatgctaagagaaaccttgaggacgacctaaacaatgagtcccactctgatgatgca
acagctgtcccagttgttacagaggataccactgatgccttggataacaccatgggcaag
aatgaggacttagggaaagatgttaaggagttgaataaggaaaaagatggtaacgagggt
ttagagaaagataatgtgggattagataaggaaaaagatggtaatacaagtgttcagatg
gaaatggatatggttcaggctgatgatgttttagctgaaaaaatggttacagaaggtggc
attgtgtctacacaagtggaatcttttcaggtagttgaagagatttcagtaacaaccacc
accaaaaccactgttttggtctctgagggcactgtagatgaagggtttaatgtgaaagag
tcacaggtggttggaaacaatggggattcaaaggctgaatctcaatcacctaaagaagaa
caagctgaggtcagcaaccaggtaactgaggtcagccaagtaatctctgattctatttct
gttgatactactatctccaattctgaaaagaatgaactaaaggataatgtaattgctgat
gatgtgaaatcagaggtagatgttaagcctgaaatggtcttagatgatagcaaatcagaa
ccagatgacattgataatgataatgtaattgctgctgatgtcaagtcagagcaagttatt
gaacttaaagaggtgaaaatgtcaaccaatgttgttgtatcagttgaagaagttgatgaa
ccacttaaggacaaaatcactgatgaaagtgttgatatttgcaagaaaagtgatagtggg
gatgttggctcttcagagaagttgaatttggacagaagttctggtgatgattcaatggag
gaagatgttcaagaaagcaaacagattgactcaaagtttactcctaatgaagtgggagat
atcagtgggaaaattgaagtaaaggaagatgattctgttgatgttatggttgtagatgac
aagaattctgctcctgttgaagatataacatccacaaaaagaaaaccacagatattagca
gaaaacagtgaagtagtaaagaggcaacgtaggtggaatactgaacaacagttaactaat
aatcattctgctgttacttctcctaaagatacaattcagactccagttaaacgtgtattt
tcaagatctgagtctaaaattgatcaagaattacccaaagaacgtattgttccaccttca
tcaaagactccaactaattctcttcgaattgataattttttgcgtccttttactttaaaa
gctgtgcaagaacttcttgggaaaacagggacagttgtcagtttctggatggatcatatc
aaaacccattgttatgttacatatgcatctgcagaagaagcaatagaaactcgaaatgct
gtatgcaacctacagtggccagtgaatggtggacgcctgttaatggctgattttgtggat
ccacaagaggttaagaatcgggtcgacccaccaccaccaccacctccagccaccaccatg
caaccaccgcagccctctcctcgactacacgttcagaaacaacagcagcagcagcttcct
cctccaccagctctagccgccatgcagccgcaatatccctcccctcgactacatgttcag
aaacaaccacagcagcttcctccaccacctccgccaccagtaagggaggttgccgccctt
cctccaccaccagttgatcctccaattgttacattggatgatctgtttaggaagacaaga
gccacccctcgtatctactacctaccactttcggatgaacaagtggcggcaaagatgaag
gggaaagcaggcttaaaggagtag
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