KEGG   Lactuca sativa (garden lettuce): 111906710
Entry
111906710         CDS       T05352                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
lsv  Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:lsv04812]
    111906710
Cytoskeleton proteins [BR:lsv04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     111906710
SSDB
Motif
Pfam: WD40 Katanin_con80 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st EIF3I Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_SCAP ANAPC4_WD40 Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_WDR75_1st eIF2A Beta-prop_EIPR1 Beta-prop_SPT8 NBCH_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_VPS8 WD_LRWD1
Other DBs
NCBI-GeneID: 111906710
NCBI-ProteinID: XP_023758251
LinkDB
Position
7:complement(26924712..26931453)
AA seq 1003 aa
MAKRGYKLQEFVAHSANVNCLKIGKKTRRNFITGGDDEKVNLWSIGKPTAITSLSGHTSP
IESVAFDSTEVLVAAGASSGVIKLWDLEETKVVRTLNGHRSYCTAVEFHPFGEFFASGSM
DTNLKIWDIRKKGCIHTYKGHRRAVSTIRFSPDGRWVVSGGLDNVIKIWDLTAGKLLHEF
KFHEGHIKSMDFHPLEFLLATGSSDKTVKFWDLETFELIGTTRPEATGVRSITFHPDGRT
IFCGLDSSLKVYSWEPIICHDSLDMGWSTLGDLCINDGKLVGCSYYQNSVAVWVADTSLI
EQSGPSNLAEENTRMPHKFKLQKDLTERVESPRRSTMSSDDDTKDIKNIYVDTAGMTPVS
SKVVNLQNPKEIHNLVTPNPTLPPAAAKITSKPLINEQDNTAASLKPSHRRKPSTTKLDI
EGLSITVESGLKSGSDPDAAKVSNLQRRVLSDDAAKDSSEEKTKESQKASSPSNESVDSN
KELKSVKYVNGVAVVHGRTRSLVERFEKREKLNTDESQLPDPSARVLTNTDTPAPIMNPT
PEPEPKTFTMPGKRPDVTKIPIKVPEAETFTIPEKRPDLTKIPIKASASETFTIPEKRPD
VTKMPIKTPEAVTFTMPEKIPHVTKMPIKAPEAETYTMPVVTKMPLKEPEAETFTMPDVT
KMPLKAAEAETFNMNDVTKMPLKAPEAENFMMPEKIPDVVSSASNEATKSPTRVQKHDSR
PNTRSEDTHVQRPRTAPSMLPEKGKVSPMPRSISSRRLMPEKLRTPSPMVVARRSTASSR
VMPERTRISSVLVSPRHDTINNRMIPQKPKSSPLMDDNGPQTTGRGLVSKKDNDDVAEDL
MTNHDVFLSSLRSRLTKLQVVRHFWEHNDTKGAIDALRKLPDHAVQADVVNVLMERMDSL
TLDLFSCLLPVLLELLDSNTERHISVSLQLLLKLVAVFGPVVSSTISAPPAVGVDLHAEK
RLESCNQCHTQLQKIHKCLPSIIKRGGLVARCAQELNIILQKS
NT seq 3012 nt   +upstreamnt  +downstreamnt
atggcgaaacgaggatataaattacaggaatttgtggctcattcggcaaatgtgaactgt
ttgaaaatcgggaagaagacacgtagaaacttcattacaggtggtgatgatgaaaaagta
aatctttggtcaattgggaaacccactgctataacgagtctaagtggtcatacaagccct
attgaatctgtagcttttgattcaacagaagttttagtagctgctggagcttcttcaggc
gtgataaaactttgggatctggaagagacaaaagtggttcgcacacttaatggacacaga
tcctattgcactgctgttgagtttcatccatttggtgagttttttgcatcgggttccatg
gatactaatttgaagatatgggatattagaaagaaagggtgcattcacacatataaagga
cacagacgagctgttagtactattagatttagtcctgatggtcgttgggtggtgtctggg
ggacttgataatgttataaagatatgggacttgacagctggaaagcttttacatgagttt
aagtttcatgaagggcacattaagtcaatggattttcatcctcttgagtttcttctagca
acaggttcatcagataaaactgtaaaattttgggacttggagacctttgaattaattgga
acaactcgaccagaggctacaggtgtaagatcaataacctttcacccagatgggagaact
atcttttgtgggttagacagcagtttaaaggtgtattcatgggagcccattatttgtcat
gattctcttgatatgggatggtcaacattgggtgacctctgcattaatgatgggaagctt
gtaggatgctcatattatcaaaactctgttgcagtttgggtggctgatacttcgcttatt
gaacagagtgggccaagtaatttagctgaggaaaatactcgtatgccacataaatttaaa
ctccagaaagatttaacagagagagtagagagtcctagaagatccaccatgtcctctgat
gatgacacaaaggatataaagaacatatatgtggacactgcaggcatgactcctgtttct
tcaaaagttgtcaacttacaaaatcccaaagaaattcataatttggttacccctaaccct
acactccctcctgcagcagccaaaattaccagtaagcccttaatcaatgaacaggataac
actgctgcatcacttaagccatctcataggcgaaaaccatcaactaccaaattagatatt
gaagggctatcaataacagttgaatctggtttaaaatctggatcagatccagatgctgct
aaagtttcaaacttacaaagaagggttttatcagatgatgctgctaaagattcttccgag
gagaaaacaaaagagtctcaaaaagcttcatctccaagcaatgagtctgttgattcaaac
aaagagttgaaatctgttaaatatgtaaacggagtggcggttgtccatggaaggactcgc
agcctggttgagagatttgaaaagagagagaagttgaacactgatgaatcacaactgccc
gatccatctgcccgggtattaaccaacacagatacacctgccccaataatgaacccaaca
cctgaacctgaacccaaaacattcaccatgcccggaaaaagacctgatgtgactaaaata
cccataaaggtacctgaagctgaaaccttcaccattcctgaaaaaagacctgatctgact
aaaatacccataaaggcctctgcatctgaaaccttcaccatccctgaaaaaagacccgat
gtgaccaaaatgcccataaagacacctgaagctgtaaccttcaccatgcctgaaaagata
ccccatgtgaccaaaatgcccataaaggcacctgaagctgaaacctataccatgcctgtt
gtgactaaaatgcccctaaaggaacctgaagctgaaacctttaccatgcccgatgtgact
aagatgcccctaaaggcagctgaagctgaaacctttaacatgaacgatgtgactaaaatg
cccctaaaggcacctgaagctgaaaactttatgatgcctgaaaagatacctgatgtggtt
tcgagtgcatcaaatgaggctactaaatcacccacaagggtacaaaaacatgattcacgc
ccaaacacaagatctgaagatacacatgttcaaagaccaagaactgctcctagtatgtta
cctgaaaaaggtaaagtctcacccatgccaagatctataagttctcggcgtttaatgcct
gaaaaacttagaactccatctccaatggtggttgcaagaagatctactgcttcctctcgt
gtgatgcctgaaagaactagaatctcatctgtattggtgtccccaaggcatgatactatc
aataatagaatgatacctcaaaaacctaaatcttctccattgatggatgataatggccca
cagactacagggagaggtctggtgtctaagaaagataatgatgatgtggcagaagatttg
atgacgaatcatgatgtgtttttgagtagtctgcggtcccgcctcacaaagctccaggtg
gtacgacacttttgggagcacaatgacacaaagggtgctatagatgccttgaggaaattg
ccagatcatgctgttcaagcagatgtggtgaatgttcttatggaaagaatggattctctc
acattagatctcttttcttgcttgctacctgtccttttggaattactggacagcaacaca
gagcggcatataagtgtatcattacaacttttattaaagcttgtggctgtctttgggcct
gtagtcagctcaaccatttcagcacctccagctgttggtgttgatcttcatgcagaaaaa
agacttgaatcctgcaatcaatgccatacacagctccagaagattcacaaatgtctcccc
tctattataaagcgaggaggtttggtagcaagatgtgctcaagaactaaacattattctt
caaaaatcatga

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