Lactuca sativa (garden lettuce): 111907677
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Entry
111907677 CDS
T05352
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111907677
09123 Folding, sorting and degradation
03018 RNA degradation
111907677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111907677
03041 Spliceosome [BR:
lsv03041
]
111907677
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111907677
mRNA degradation factors
5'-3' decay
Lsm complex
111907677
Spliceosome [BR:
lsv03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111907677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Motif
Other DBs
NCBI-GeneID:
111907677
NCBI-ProteinID:
XP_023759260
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All DBs
Position
8:complement(138038037..138039462)
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AA seq
87 aa
AA seq
DB search
MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITPEGR
RITKLDQILLNGNNIAILVPGGSPDPE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacaatccttcgcagctcctcccttcagagttgatagatcggtgcataggttcg
aagatatgggtgataatgaaaggggacaaggaactcgttggaactctcaagggtttcgat
gtctatgttaacatggttctcgaggacgtcactgaatatgaaataacacctgaaggacgt
aggattacaaagcttgatcaaattttgctcaatggaaataacatagcaattcttgttcct
ggtggttctccagatccagaatga
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