Lactuca sativa (garden lettuce): 111907941
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Entry
111907941 CDS
T05352
Name
(RefSeq) nuclear poly(A) polymerase 4 isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111907941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111907941
Enzymes [BR:
lsv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
111907941
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
111907941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
111907941
NCBI-ProteinID:
XP_023759521
LinkDB
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Position
4:complement(177282242..177287009)
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AA seq
594 aa
AA seq
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MVGSEALPSPRQHGVTKPLSLAGPSDADLLRTKKLNKFLVDAGLYESKEEAAKRVEVLGR
IKQIVVDWVKQLTRLRGYTDQMVEDANAVIFTFGSYRLGVHGPGADIDTLCVGPSYVNRD
DFFFVLHDMLSGMEEVTELQPVPDAHVPVMKFKFDGICIDLLYASISVLVVPDDLDISDD
SVLYDVDEPTVRSLNGCRVADQILKHVPNVEHFRTTLRCLKFWAKKRGVYSNVTGFLGGV
NWALLVARVCQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIQQQELGFAVWDPRKNPK
DRTHHMPIITPAYPCMNSSYNVSTSTLRVMTEQFLFANTICQEIEVNKAQWHALFEPYMF
FESYRNYLQVDIVAGDCDDLRAWKGWVESRLRQLTLMIERDTMGKLQCHPYPHEYSDPSK
QCSHSAFFMGLQRKQGEVVLEGQQFDIRKTVDEFRHSVNMYVFWRPGMEIYVSHVRRKQI
PLYVFPEGCRIPRSNIIHPSSEEEASRKRKLEAIGNGMKQDGLPKRQSVSPRNRDSDSDS
VSPVIVNHSCAEEGKRNVFEVQVLPKGLELVVSSRPVVELEQGTVIRLGVTSTA
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggtgggttcggaggctttaccttcaccaaggcagcacggggttacgaaacccttgtct
ctagcgggaccatctgacgctgatttactaagaaccaagaaattgaacaagttcttggta
gatgctggactatacgaaagcaaagaagaagccgctaagagggtggaagttcttggtcga
attaagcagattgtagttgattgggtgaagcaacttactcgcttacgtggctatacagac
caaatggttgaagatgcaaatgctgtcatctttacttttggttcatatcgacttggagtt
catggtcctggagcagacattgacactttatgtgtagggccttcttatgtgaatcgagat
gacttcttttttgtattgcatgatatgttgtcaggaatggaggaagttacagaacttcaa
ccagttccagatgctcatgttccagtcatgaaatttaaatttgatggaatttgtattgat
cttctttatgccagcatttctgttttagttgttccagatgatctagacatatctgatgat
tctgtcttgtatgatgttgatgagcctactgtgaggagtcttaatggttgcagggttgct
gatcagattcttaaacatgttccaaatgttgagcattttcgtacaacacttcgttgcttg
aagttttgggctaaaaagcgtggagtttattcaaatgtgactggatttctaggtggtgtg
aattgggctcttcttgttgcacgagtttgtcaattttacccaaatgccattccaagtatg
ctggtttcaaggttctttagggtctacacacagtggcgttggccaaacccagtcatgctc
tgttcaatccaacaacaagagctcggattcgccgtgtgggacccacgcaaaaaccctaaa
gacagaactcaccatatgcccattattacccctgcatacccctgcatgaactccagctac
aatgtctccactagcacgctccgtgtcatgactgaacagttcctcttcgccaatacaata
tgccaggaaatagaagtcaacaaagcccagtggcatgcattgtttgaaccatatatgttc
ttcgaaagctacagaaattatttacaggtggatatagttgctggagattgtgatgatctt
cgtgcatggaaaggttgggttgaatcgcgtttgaggcagttgactttaatgattgagagg
gatacgatggggaagctgcagtgtcatccatacccacatgaatactcagacccttcaaag
caatgttcacacagtgctttcttcatggggttacagaggaaacaaggggaagtggttcta
gaaggtcaacagtttgacatcagaaaaacagttgatgagtttagacattcggtcaacatg
tatgtgttttggaggcccggaatggaaatctatgtttcccatgtcagaagaaaacagatt
cctttgtatgtgtttccggaaggttgtagaatacctaggtcaaacatcatccatccatca
agtgaagaagaagcttctagaaagagaaaattagaagcaattggaaatggaatgaaacaa
gatggtttaccgaaaagacaatccgtgagtccccggaatcgcgattccgattccgattcc
gtttcccctgtcattgttaatcattcgtgtgctgaagagggtaaacggaacgtgtttgaa
gttcaggttttgccgaagggacttgagttggtggtgagttcgcgaccggttgttgagttg
gaacagggaacggttataaggttaggtgtgacatcaacagcttga
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