Lactuca sativa (garden lettuce): 111908121
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Entry
111908121 CDS
T05352
Symbol
LOC111908121
Name
(RefSeq) hydroxyproline-rich glycoprotein family protein
KO
K14307
nucleoporin p58/p45
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111908121 (LOC111908121)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111908121 (LOC111908121)
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
111908121 (LOC111908121)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUP58_M
DnaJ_cyano_C
Motif
Other DBs
NCBI-GeneID:
111908121
NCBI-ProteinID:
XP_023759731
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All DBs
Position
4:393627665..393630293
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AA seq
485 aa
AA seq
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MAFSFTPQQQQPSLFQPQQQQQQSPFQPSGGIPFFQPQQQQLLQQQQQQLQQQQNQLFLF
TNEKTPATYGTKWSDLHPDSQKFLLQIEERILEYRDESQRLDQCGRLYDSSVSNDGFELD
ASHIVQELGGITTAMDRQKLLLQELTSNVKDMLRNTEIAVRSFMILRSRFQHPNKATTTT
PPQAPGAPPTTTTTTTQPTTSAIVPVYDFYTGLPRKPSPFFQQTVARFDKYLHECRQWVE
ELEQLLLESSKNNSMNSNPSLLESLPKVMSNVHDFFVYVASKVESIHQYMESMKTAYLSD
QRGRGDTNDPFLEADRRETAKRAAAARRVHPTLHLPSNSQPSGTLLASSATPAAATSSAA
AVATPPVGAAANVASGSGLFSTPFGATSSSSLFSTPAPSAPSSNLFGSSGGTPQTSIFGA
FSTSTPALGPTSTGGGSLFSTPFASNPASGASTFSTPFGTGAATGSGASFNTQSKARGKS
RTGRR
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttcattcacgccacaacaacaacaaccttcactatttcaaccccaacaacaa
caacagcaatcgccgtttcaaccgagtggcggcatccccttctttcaaccacagcaacaa
cagcttctgcaacagcaacagcagcaattgcagcagcaacagaatcaactttttctgttt
acaaatgagaagactccggctacctacgggactaaatggtccgacctccatcccgattct
cagaagtttctccttcaaatcgaagagagaatactggagtatagagatgaaagccaacgt
ttggatcagtgtggaagactctatgattcttcagtctccaatgatggctttgagcttgat
gcaagtcacattgttcaggaacttggtggaatcactacagccatggatcgacaaaagctt
ctgttacaagaactcacatcaaatgtcaaagacatgctaagaaacacagagattgctgtt
cgttccttcatgatcctccgttccaggtttcaacacccaaacaaagccaccaccacaaca
ccaccacaagctcccggagctccaccaaccaccaccaccaccaccactcaacctacaacc
tccgccatagtacctgtatatgatttctacaccggcctccctcgcaaaccctccccattc
ttccaacaaacagttgccagatttgataaatatcttcacgaatgccgccagtgggtggag
gaattagaacagctgcttctagaatcttccaagaacaactccatgaattccaacccttcg
ttgcttgaatctcttccaaaagtcatgtcaaacgttcatgacttctttgtgtatgtagca
tcaaaggtggagagtattcatcagtatatggagtcgatgaaaaccgcatatctttctgat
caacgtggaagaggagacacaaacgatccgtttctcgaggctgaccggagagaaaccgcg
aaacgggcagctgctgcccgaagggtacatccgacattacatctcccatctaactcacag
ccatctggcacgttacttgccagctcagcaacacctgctgctgccacgtcatctgctgct
gctgttgctactccacctgtgggggctgctgccaatgtggcgtctggttcagggctgttt
agtactccgtttggtgccacgtcatcgtcttctttgttttcaactcctgctccttctgcc
ccgtcatcaaatttgtttggatcgagtggcgggacccctcaaacatcgatttttggggcg
ttttcgacttcgacacctgcgttggggcccacatcgacaggtggcggatccctgttttct
acaccgtttgcttcaaatcccgcaagtggagcctccacattttctacaccatttggtaca
ggggcagcaacaggatcaggggcaagctttaatactcaatcaaaagcaagaggtaaaagt
cgcacaggaaggaggtaa
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