Lactuca sativa (garden lettuce): 111908264
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Entry
111908264 CDS
T05352
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111908264
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
111908264
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
111908264
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
AAA_30
DEXQc_Suv3
AAA_19
T2SSE
IstB_IS21
Helicase_PWI
DUF4600
Motif
Other DBs
NCBI-GeneID:
111908264
NCBI-ProteinID:
XP_023759860
LinkDB
All DBs
Position
5:complement(50577180..50590765)
Genome browser
AA seq
2082 aa
AA seq
DB search
MLLELPRLTNSLRDPFDADQAYINRKSILQSFNSRRSSAKSVDEFEVARKIVHRWDEASI
EVRQAYKQFVGAVVELIDGVVINEEFKEVALAVYRLFGTHGEEEEENRRIIEKKSELQKL
LGYSVSDTKLQKVVNAVQSLSKLQPDNHKLAENQVNASDDCQEFGANLVFHHPARFLVDE
SIEDVEMWGEDSNVTSTSLHGDWYDNNEVTNHHPVGGVFDLGWLRDECNKIVKSSTSQLP
QDELAMAICRVLDSDKAGDEIAGDLLDLVGDSAFETVQDLIMHRKELVEAIHHGMLNLKS
EKVVSGSQPRMPSYGTQVTVQTESEKQIDKLRRKEEKKHKRGTDHGADNELSVMSFSSLL
QASAKKSPFDDLIGHGEGSNTLAVTALPQGTTRKHHKGYEEVSIPPTQTAPMKPGEKLIE
ITELDEFAQAAFQGYKSLNRIQSRIFHTTYNTNENILVCAPTGAGKTNIAMIAVLHEIGQ
HFKDGYLHKEEFKIVYVAPMKALAAEVTKAFSHRLAPLNMVVKELTGDMQLSKNELEETQ
MIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQS
MIRIVGLSATLPNYLEVAQFLRVNTEAGLFFFDSSYRPVPLAQQYIGITETNYQARNELL
NEVCYKKVSESLKQGHQAMVFVHSRKDTGKTADKLVELARKYDELDLFRNDEHPQFQLLK
MEVSKSRNKELVQLFGSGVGIHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPA
HTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLL
TSQLPIESQFITSLKDNLNAEVTLGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIGWDEV
IADPSLSMKQRSLVSDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNE
MLRRHMSDSEIIDMVAHSTEFENIVVREEEQNELETLARTVCPLEVKGGPTNKHGKVSIL
IQLYISRGSIDAFSLISDAAYISASLARIMRALFEICLRRGWCEMTSFMLEYCKAVDRQI
WPHQHPLRQFDRDISPEIIRKLEEREIDLSHLLEMQEKEIGAMIRYAPAGRVVKQYIGFF
PSILLSATISPITRTVLKVDLVLTPDFVWKDRWHGAAQRWWILVEDSENDHIYHSELFTL
TKRAAKGEPQKLSFTVPIFEPHPPQYYIRAVSDSWLQSEAFYTISFKNLALPESHTTHTE
LLDLKPLPVTALGNKAYEALYRFSHFNPIQTQAFHVLYHTQNNVLLGAPTGSGKTISAEL
AMLHLFNTAPDMKVIYIAPLKAIVRERMNDWKNGLVSKLGKKMVEMTGDYTPDMMALMSA
DIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTE
RPVRFVGLSTALANAQNLADWLGVEEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM
NKPTYAAICTHSPTKPVLIFVSSRRQTRLTALELIQYAASDEHPRQFLAMPEEALQMIVS
QVTDQNLRHTLQFGIGLHHAGLNDKDRSFVEELFANNKIQVLVCTSTLAWGVNLPAHLVI
IKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPF
PVESSLRDQLHDHINAEIVSGTISHKQDAVHYMTWTYLFRRLMVNPAYYGLEDCDPESLN
SYLSSLVQNTFEDLEDGGCIKMDEENVESLMLGSIASQYYLKYMTISMFASNIESDTSLE
VFLNVLSAASEYDELPVRHNEENYNEALSAKVPYAVDKNRLDDPHVKANLLFQAHFSQVE
LPISDYYTDLKSVLDQSIRIIQAMIDICANSGWLESSITCMHLLQMVMQGMWFERDSPLW
MLPCMSEDLFSLLQKGGISNIQQLLDLPKMSMQSRFGNSASRLQQDLQHFPRIQVKLKIQ
GRDVGASLNIRLERSNSNRRKSSRAFTPRFPKLKDEAWWLVLGNSSTSELHALKRVSFTN
NVVTRMKLPPTATNIQGMKLFLISDCYLGFDQEYSIEEVMES
NT seq
6249 nt
NT seq
+upstream
nt +downstream
nt
atgttgctcgaattgcctcgattaaccaactccctgagggatccattcgacgcagatcaa
gcttatatcaatcgcaaatccattcttcaatcattcaacagtcgtcgcagctctgcaaag
tcagttgacgaattcgaagttgctcgaaagattgttcatcgatgggatgaagcttctatt
gaagtccgccaagcatacaaacaatttgttggggctgtggttgagttgattgatggagta
gtgatcaatgaggagttcaaagaggtggcgttggcagtgtacaggctttttggtactcat
ggagaagaggaagaagagaatagaaggatcattgaaaagaaatctgaactacaaaaacta
cttggttattctgtttcggatacaaagctacagaaagttgttaatgctgtgcaaagtctt
tccaagttgcagccagacaaccacaaattggctgaaaaccaagtcaatgccagtgatgat
tgtcaagagtttggtgcaaacttggtttttcaccacccagcccggttcttggttgatgaa
tctattgaggatgtagagatgtggggggaggattcaaatgtaacttctacctcacttcat
ggggactggtatgataacaatgaggtcactaatcaccatcctgttggtggagtttttgat
ttaggatggttaagagatgaatgcaataaaatagtaaaaagtagtacttctcagcttcct
caagatgaactagcaatggctatttgtcgggtacttgattcagacaaggctggtgatgag
atagctggtgatttgttggatctagttggtgatagtgcatttgaaactgttcaagatctt
atcatgcataggaaggaactcgtggaagccattcatcatgggatgctgaacttaaaatct
gaaaaggtggtttctgggtctcaaccacgcatgcctagctatggtactcaggttacagtt
caaacagaatcagaaaagcaaattgataaactaagacgcaaagaggagaagaaacataaa
cgaggaactgatcatggggctgataacgagttgtctgttatgagttttagttctttactt
caagcaagtgcaaagaaaagcccctttgatgatctgattggacatggtgaagggtcaaac
acattagcagttactgctcttcctcagggaacaactaggaaacatcataagggatatgaa
gaagtttccatccctccaacacaaactgcacccatgaagcctggagagaagctgattgaa
ataactgagttggatgaatttgcacaagctgcttttcaaggctacaaatcactcaaccgt
attcagagcagaattttccatactacttacaacactaatgagaacattctggtttgtgct
ccaacaggagctgggaaaacaaatatagctatgattgctgttctacatgagattggacag
cacttcaaagatggctacttgcataaagaagagtttaagatagtttatgttgctcccatg
aaggcattagctgctgaagttaccaaggcatttagccatcgattagctccattgaacatg
gttgtgaaagaacttactggggacatgcaactctccaaaaatgaactcgaagaaactcag
atgattgtgacaacacctgagaaatgggatgtaattactcgtaaaagcagtgacatgtca
ctgtccatgctagtaaagctcttgattattgatgaagtacatctgctgaatgatgataga
gggcctgtaatagaagcattagtggcccgcacacttcgccaggtggagtcaacacagtca
atgatccgtattgtaggcctttcagctactcttcccaattatctcgaggttgcacaattt
ctgagggttaacactgaggcgggtctcttcttctttgattctagctatcgtcctgtgcct
cttgcacagcaatatattggaattacagagacgaattatcaagcacgaaatgaattgttg
aatgaagtttgctacaaaaaggtttctgaatcactaaagcaagggcatcaagctatggtg
tttgttcattcacggaaggacactgggaaaacagctgataaactggttgaacttgcccgg
aagtatgatgagctagacctcttcaggaatgatgaacatcctcagtttcagttgcttaag
atggaggtctcaaagtctaggaacaaagagctcgttcagctatttggatcaggagttggc
atccatcatgcaggaatgttacgtgctgatagaggtttgaccgagcgacttttttctgat
ggattgctgaaggtccttgtttgtacagcaactttggcatggggagtaaatctacctgca
cacactgttgtaattaaggggactcagttgtatgatccaaaggctggtggatggcgagat
ctgggtatgctggacgttatgcagatttttggacgtgctggaagacctcagtttgataaa
agtggtgaaggcattataattacatctcatgataagttggcctactatctgcggcttttg
actagtcaacttcccatagaaagccagttcattacctccttgaaagataacttaaatgca
gaggtcacattggggactgtgacaaatgtgaaggaagcttgtgcatggcttggatacaca
tacctttttataagaatgaagatgaatcctctggcatatggtattggatgggatgaggtt
attgcagatccttcattgagtatgaagcaaagatcacttgtttcagatgctgcacgtgca
cttgacaaagctaaaatgatgcgttttgatgaaaaaagtgggaacttctattgtactgaa
cttggtcgcattgctagtcacttttatattcaatattctagtgtggagacatacaatgag
atgctgagacgccatatgagtgatagtgagataatcgacatggttgctcactctactgaa
tttgaaaatattgttgttcgagaggaggagcaaaatgaattggaaaccttagcccgcact
gtctgtcctttagaagtcaagggtggtcccacaaataaacatggaaaagtatctatttta
attcagctatacatatctcgagggtctatcgatgcattttccttaatttctgatgcggca
tacattagtgccagcttggcgcgtataatgcgggccctttttgaaatttgtttgcgtaga
ggatggtgtgagatgacttccttcatgttggagtattgcaaggctgtagatcgtcaaata
tggccccaccagcatcctctcagacaatttgacagagatatatcaccagaaataattcgg
aagctagaagaacgagagattgacttgagtcatcttctagagatgcaagagaaggaaatt
ggagctatgatccgttatgcacctgcaggaagagtagtgaagcaatatataggattcttt
ccatcaatcttgttgtctgccacaataagtccgatcactagaactgttttaaaggtagat
ctggtcttaactccagactttgtatggaaagatcgctggcatggtgctgcacaacgttgg
tggattcttgttgaggattcagagaatgatcatatctaccactcggagctttttacattg
accaaacgagcagcaaaaggggaaccacagaagctttccttcactgtgccgatttttgaa
ccacatcctcctcaatactacattcgtgctgtttctgattcttggttgcaatctgaggct
ttctatactatctcttttaagaatctagccctaccagagagccatacaacacacactgaa
cttctagatctgaagccacttcctgtgactgcacttggcaacaaggcttacgaagctttg
tacagattttcacacttcaatcctattcaaacccaggcttttcatgtgttatatcacaca
cagaacaacgttcttttaggagctcctactggaagtgggaaaactatatctgcagagctt
gctatgcttcatttattcaatacagcccctgatatgaaggttatttacatagcaccatta
aaagccatagttcgagaacgaatgaatgattggaagaatggccttgtctctaaacttggt
aaaaagatggttgagatgactggtgattacactccagacatgatggctctgatgtcagca
gatatcataatctcaactcctgaaaagtgggatggtattagtcgtaattggcacagtcga
agctatgtcactaaggttggcctcatgattttggatgagattcacctacttggagctgat
cgtggacctatacttgaggtcatcgtctcaaggatgagatacatatcatcacaaacggag
cgacccgttcggtttgttggtttgtcaacagccttagcaaatgcccagaatctggctgac
tggttgggagttgaggagattggtctgttcaatttcaagccaagtgtacgacctgtgcct
cttgaagttcatatacaggggtacccagggaaattctactgtccaagaatgaatagcatg
aataagccaacctatgctgccatatgtacacactcaccaacaaaaccagttttaatattt
gtttcatctcgtcggcagacaaggctcactgcattagaactcattcagtatgccgcttca
gatgaacatccaaggcagtttcttgccatgcctgaggaggcgctacagatgattgtttct
caggtcactgatcagaatcttaggcacactctacaatttggtatcggattacatcatgca
ggattaaacgacaaagatagatcttttgttgaggaactttttgcaaacaacaagattcag
gttttggtttgcacaagtacgttagcttggggggtaaatcttccagctcatctggttata
ataaagggaacagagtattatgatgggaaagcaaagcgttacgttgattttccaatcaca
gacatcttgcaaatgatgggacgtgcaggtcgtcctcaatatgatcaacatgggaaagcc
gtcattcttgtacatgaacccaaaaaaagcttctataaaaagtttctttatgaaccattt
ccagttgaaagcagtcttagagaccagctccatgatcacatcaatgctgaaatagtttct
ggaacaatttctcataagcaagatgctgtacattatatgacctggacttatctgttccgt
agactgatggttaatccagcttattatggattggaggattgtgatcccgaaagtttaaat
tcttacctatcaagtctagtgcagaacacatttgaagatttagaagatggtggatgcatt
aagatggatgaagaaaatgtggagtctttaatgttaggttcaatagcatcacaatattat
ctgaaatacatgacaatttccatgtttgcttcaaatatagagtcagatacctctcttgaa
gttttccttaatgtactttcggctgcttccgaatacgatgaacttcctgtccgtcataac
gaggagaactataacgaagcattatctgccaaagtcccatatgcagtcgacaaaaatcgc
ctcgatgatccacatgttaaagcaaatttgcttttccaggcgcatttttctcaagtggaa
ctgccaatcagcgactattacacagacttgaagtcagtgctggatcaaagtatacgtatt
attcaagccatgatagatatatgtgcaaatagtggatggctggaaagttccattacttgt
atgcatcttctccagatggtcatgcagggtatgtggtttgagagggattcacccctatgg
atgttgccatgcatgagtgaagaccttttcagcttattgcaaaaaggaggaatttcaaat
atacaacagttactggatctcccgaaaatgagtatgcaatctagatttggaaacagcgct
tcaagactacaacaggatctacaacatttcccgcgaattcaagtcaaactcaagattcaa
ggaagggatgttggggcgtctctcaatattcgtttggagagatccaactccaatcgtaga
aaatcatcaagagcttttacccctcgtttcccaaagttgaaagatgaagcatggtggttg
gttcttgggaactcctcaacctctgaactacatgctcttaaaagagtttccttcacaaac
aatgtggttacccgcatgaagttgccaccaaccgcaaccaatattcaggggatgaagttg
tttctgatatcagattgttatcttggatttgatcaagaatactcgattgaagaggttatg
gagtcttag
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integrated database retrieval system
