KEGG   Lactuca sativa (garden lettuce): 111909090
Entry
111909090         CDS       T05352                                 
Name
(RefSeq) uncharacterized protein LOC111909090
  KO
K12857  Prp8 binding protein
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111909090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lsv03041]
    111909090
Spliceosome [BR:lsv03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    111909090
 Complex C
   U5 SnRNP specific factors
    111909090
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_EML_2 WDR55 EIF3I Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st NBCH_WD40 WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_DCAF12 eIF2A Beta-prop_HPS5 Beta-prop_WDR75_2nd Beta-prop_Nup120_160 PEP5_VPS11_N RMC1_N
Other DBs
NCBI-GeneID: 111909090
NCBI-ProteinID: XP_023760644
LinkDB
Position
3:complement(46902772..46904832)
AA seq 337 aa
MQAGEGALSVMGPRPMDLSSITPYSGSGSKQRTSSLLSPIMLLTGHQSGIYTMKFNPSGT
VVASGSHDREIFLWHVSGECKNFMVLKGHKNAILDLQWTTDGSQIISASPDKTLRAWDVE
TGKQIKKMAEHSSFVNSCCPSRRGPPLVVSGSDDGTAKLWDLRQRGAIQTFPDKYQITAV
GFSDASDKIYTGGIDNDVKIWDLRRNEVTMTLEGHQNMITGMQLSPDGSYLLTNGMDSTL
RIWDMRPYAPQNRCVKIMEGHQHNVEQNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRI
LYKLPGHTGSVNECVFHPTEPIIGSCSSDKQIYLGEI
NT seq 1014 nt   +upstreamnt  +downstreamnt
atgcaagcaggtgaaggtgccctatctgtgatgggcccacgcccaatggatttatcaagc
attactccatatagtgggagtgggagtaaacaaagaacatcaagtttattgtcaccaatc
atgctgctgacaggtcaccagagtggcatatacaccatgaagtttaatccatcaggaaca
gtggtggcttccgggtcccacgacagagaaatctttctatggcacgtaagtggggaatgc
aaaaacttcatggttctaaaaggtcacaaaaacgccatcttggatcttcagtggaccaca
gacgggtcccagataatctccgcgagtccagacaaaaccttacgcgcatgggatgtggaa
accgggaagcagatcaagaaaatggcggaacactcctccttcgtgaactcatgctgtccc
tcgcgcagaggacctccgctggttgtgagcggctcagacgacggcaccgccaagctgtgg
gacctccgccaaaggggcgccatccagacattcccagataaataccagatcacagcggtt
ggtttttctgatgcctcagacaagatctacacgggtggaatcgacaacgacgtgaaaata
tgggatttgaggagaaatgaggtgacaatgacgcttgaaggtcaccagaacatgataacg
ggtatgcagctaagccctgatgggtcttatcttttgaccaatgggatggattctacgctt
aggatttgggacatgcgcccttatgccccacagaataggtgtgtgaagataatggaggga
caccagcataatgtggagcagaatcttctgaaatgtgggtggtcccctgatgggagtaag
gttacggctggaagctctgatcggatggtgtatatttgggatacgacttcacggcggata
ctttataagcttcctggccacactggatcggttaacgaatgtgtgttccacccaactgaa
cccatcattggatcttgcagcagtgataaacagatatatcttggggagatctga

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