Lactuca sativa (garden lettuce): 111909271
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Entry
111909271 CDS
T05352
Name
(RefSeq) coatomer subunit beta'-2
KO
K17302
coatomer subunit beta'
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsv04131
]
111909271
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsv04147
]
111909271
Membrane trafficking [BR:
lsv04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
111909271
Exosome [BR:
lsv04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
111909271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_IFT140_1st
PEP5_VPS11_N
NBCH_WD40
Beta-prop_HPS5
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_WDR75_2nd
Beta-prop_IFT122_1st
Beta-prop_Nup120_160
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
WD40_RFWD3
WD40_like
TPR_GEMI5
WD_LRWD1
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
111909271
NCBI-ProteinID:
XP_023760833
LinkDB
All DBs
Position
1:complement(41998829..42008511)
Genome browser
AA seq
924 aa
AA seq
DB search
MPLRLEIKRKLAQRSERVKSVDLHPTEPWILTSLYSGTVCIWDYQSQAMAKSFEVTELPV
RSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYILSSSDD
MLIKLWDWEKSWYCTQIFEGHSHYVMQVTINPKDTNTFASASLDRTIKIWNLGSPDPNFT
LDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKTCVQTLEGHTHNVSAVCFHPE
LPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYMKGSRRIAIGYDEGTIMVKVG
REEPVASMDNSGKIIWAKHNEIQTVNIKSVGADFEVSDGERLPLGVKELGTCDLYPQSLK
HNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEIVWSSDGEYAVRESTTKIKIFNKSFQ
EKKSIRPTFSAERMYGGSLLAMCSNDFICFYDWAECRLIQRIDVNVKNLYWADSGDMLAI
SSDSSFYILQYNHDVVSAHLDSGRSVDEQGIEDSFKLLYEVSERVRTGLWVGDCFIYTNS
SWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVFLIDKEFNVIGYTLLLTLIEYKTLVM
RGDLDKASTVLPSIPKEHHNSVAHFLESRGMIDEALEVATDPDYRFELAIQLGKLEIAKD
IALVAQSESKWKQLGELAMSTGLLEMAEDCLKHANDLSGLLLLYSSLGDAEEIAKLALVA
KENGKNNVAFACLFMLGKLEDCLQLLVDSNRIPEAALMARSYLPSKVSEIVALWRKDLNK
VNQKAAESLADPEEYPNMFEDWQIALEVEERATETRSSYPPAEEYVNYVDRSHVNLVDIF
KHMQLDDDEPHENGELDHEEGVEENGNEGEYIDGQEEEEAAAAAANANANAMDNDSSDGA
VFVNGNEAEEEEEEWVLTPRHQVD
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcaggctcgagatcaagaggaaacttgctcaaagatcagaaagagtaaaatcc
gtggatctgcatccaacagagccatggatcctcacaagtttgtattcaggaacagtctgc
atctgggattaccagtctcaggctatggcaaaatcctttgaggttactgaattaccagtc
agatcagcaaagtttgtagcccgcaagcagtgggttgttgcaggagcagatgacatgttt
atccgtgtgtacaattacaatacgatggataaagtcaaagtatttgaggcacataccgat
tacattcggtgtgtggctgtccaccctaccctcccatatatactttcatcttctgatgat
atgcttattaagctttgggactgggaaaagagttggtattgtactcaaatctttgaggga
cattcccattatgtcatgcaagtgacaatcaatcctaaagacaccaatacttttgcaagt
gcatcacttgatcgcaccataaagatatggaatcttgggtctcctgatcctaactttaca
ctagatgcgcatctcaaaggagtgaattgtgtggattatttcacgggtggtgataaacct
tatctaattactggatcagatgatcacactgctaaggtatgggattatcaaaccaaaact
tgtgtccagactttagaaggtcacacacacaatgtttcagctgtgtgctttcacccggag
ctgccaataataatcacaggttctgaggatggtactgtacgtatatggcattcaactact
tatagacttgagaatactttgaattatggactcgaaagggtttgggctgttggatacatg
aaaggttcacgaaggattgctattgggtatgatgaagggactataatggtgaaagttggt
agggaagagcctgtagctagcatggataacagtggaaaaattatatgggctaaacataat
gaaattcaaactgttaacattaagagtgtgggagctgattttgaggtctctgatggagag
aggttgcctttaggagttaaagaattgggaacatgtgatctctacccacaaagcttgaaa
cacaacccaaatgggaggtttgttgttgtgtgtggtgatggtgaatacatcatatataca
gctttggcatggaggaacagatcatttgggtctgcattggagatcgtgtggtcatccgat
ggtgaatatgctgttagagagagcacaactaagatcaagatttttaacaaatcttttcag
gaaaaaaagagtatccgaccaacattttctgctgaacgcatgtatggaggatcattgctc
gcgatgtgctcgaatgattttatatgtttctatgattgggctgagtgcagattgattcaa
aggatcgatgttaatgtcaagaacctttactgggcagacagtggtgatatgttagcaatt
tccagtgattcatcattctatatactacagtacaatcatgatgtagtgtctgcacatcta
gacagtggaagatctgtagatgagcaaggtattgaagattcctttaaacttctgtatgaa
gtgagcgaaagagttagaactggattgtgggttggtgactgttttatttacactaattct
tcatggcgactcaattactgtgttggtggtgaggtaaccacaatgtttcatttggatcgc
ccaatgtatcttctaggatatctagctaatcaaagcagggtttttctcattgacaaggaa
ttcaatgtcattggatacacgttgctgctcaccttgattgagtataaaacacttgtgatg
cgtggagacctagacaaagctagtactgtattgccttctattccaaaggagcatcataac
agtgttgctcatttcttggagtcacgtggaatgattgatgaagctttagaagttgctaca
gatcctgactatagatttgaactggccattcagcttggtaaactagagattgcaaaggat
attgcactagtagcacaaagtgagtcgaaatggaagcagttgggtgaattagctatgtct
actggactgttggaaatggctgaagattgtttgaaacatgcaaacgatttaagtggtctg
cttttgctgtattcttctctgggagatgctgaagagatagcaaaacttgcacttgttgca
aaagaaaatggaaaaaacaatgttgcttttgcttgtctatttatgctgggtaaattggaa
gactgtttacagttgttggtggacagcaaccggatacccgaggctgctctgatggcccgg
tcttatcttccaagcaaggtttcagaaatagtagctctttggagaaaagaccttaacaag
gttaaccagaaagcagcagaatcattagcagatcctgaagagtatccaaatatgtttgag
gactggcaaattgcacttgaagttgaagaaagagctacagaaacaaggagtagttaccct
ccagcagaagagtatgtgaattatgttgatagatcacatgtgaatcttgtggatattttt
aaacacatgcagttggatgatgatgaaccacatgaaaacggagagttggatcatgaggag
ggtgtagaagaaaacggaaatgaaggggaatatattgatggtcaagaagaagaagaagca
gcagcagcagctgcaaatgcaaatgcaaatgcaatggataatgattcttcagatggtgca
gttttcgttaatggtaacgaggctgaagaagaagaagaagagtgggtgcttacaccacgt
caccaagtcgattaa
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