Lactuca sativa (garden lettuce): 111909309
Help
Entry
111909309 CDS
T05352
Name
(RefSeq) cryptochrome-1 isoform X1
KO
K12118
cryptochrome 1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
111909309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Cryptochrome_C
Motif
Other DBs
NCBI-GeneID:
111909309
NCBI-ProteinID:
XP_023760879
LinkDB
All DBs
Position
1:complement(4619059..4622886)
Genome browser
AA seq
671 aa
AA seq
DB search
MSGGCSIVWFRRDLRVEDNPALTAGVRAGNVIAVYIWAPEEEGHYYPGRVSRWWLKQSLA
LLDSSLKNLGTSLVTKRSTDSVSSLLEIIKSTGATQLFFNHLYDPLSLVRDHRMKEILTS
NGISVRSFNADLLYEPWEVLDDEGRPFNTFTQFWDRCLSMPYDPESPQLPPKKIISGDLS
KCCSETLIFEDESEKGSNALLARAWSPGWSNADKALAAFINGPLLEYSKNRRKADSATTS
FLSPHLHFGELSVRKVFHLLRIKQVLWANEGNTTGEESVNLFLKSIGLREYSRYMSFNHP
YSHERPLLGHLKFFPWVIDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVASF
FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDGREFDRIDNPQFEGYKFDP
NGEYVRRWLPELARLPTEWIHHPWDAPEYVLQAAGIELGSNYPLPIVKMDEAKARLQEAL
TQMWQHEASSRAILENGIEEGLGDSSETAPIAFPQDMEMEMDENTLRTNPTTTTIRHYED
QMVPSMTTSLFRGGEEESSSEIGNFREDSRAEVPINQGGDGDGEGQTVRTGNMQPPIDIT
RALRITDDLPADSSNSSSSSSRERDGGVVPVWSPSTSSFSETFVGEDSSYLQRRTQSHQL
INNWRRLSQTG
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtgggtgtagtatagtgtggtttaggagagatctgagggtagaagacaaccct
gctttgactgcaggtgttagggcaggaaacgtgatagcagtgtacatatgggcacctgaa
gaagaaggtcattattaccctggaagggtgtcgagatggtggctaaaacagagtttagct
ttattggattcgtctttgaaaaaccttggtacttctcttgttaccaagagatctactgat
agcgtttcttctcttcttgagattatcaaatcgactggtgctactcagctgtttttcaat
catttatatgatccgttgtctctggttagggatcacagaatgaaggagattttaacaagt
aatgggatatcagtgcgttcatttaacgcggatttattatatgaaccatgggaagttctt
gatgatgaaggtcgtccattcaatacatttacacaattttgggacaggtgtcttagcatg
ccttatgatcctgaatctccacaactcccaccaaaaaagataatctcaggtgatttatca
aagtgttgttcagaaacattaatatttgaggacgaatccgagaaaggaagcaatgcactt
ctagcccgggcatggtcaccgggctggagcaatgcggataaagccctggcggcttttatc
aacgggccacttcttgaatactccaaaaaccgtagaaaagccgatagtgccaccacatca
ttcctatctccccacctccattttggcgaactttctgtacgaaaagtcttccatttacta
cgaatcaaacaagtcctttgggccaacgaaggtaacaccacaggtgaagaaagcgtaaat
ctattccttaaatctattgggcttcgggaatattcaaggtacatgagttttaatcacccg
tatagtcatgaaaggcctcttttggggcatttgaagttttttccatgggtgatagacgag
gggtattttaaggcgtggagacagggtcgaacaggttacccgttagttgatgcgggtatg
agagagttatgggccactggttggctccatgataggatacgggtcgtggttgcgagcttt
tttgtcaaggttttacagttaccatggagatgggggatgaagtatttttgggatacactt
ttggatgcggatcttgaaagtgatgctttgggttggcagtatattacaggtactttaccc
gatggccgtgaatttgatcgtatcgataatccacagtttgagggctataaatttgacccg
aatggggaatacgtaagaagatggctaccggaacttgctagactaccgacggaatggatt
caccacccatgggatgcaccggaatacgtgcttcaagccgccggaatcgagctcggatcc
aactaccctctcccgattgtgaaaatggatgaggcaaaagcccgattacaagaagcgctt
actcaaatgtggcagcacgaagcgtcttctcgagcgattctggagaacgggatagaagaa
gggcttggagactcgtcggaaactgctccgattgctttccctcaagatatggagatggag
atggacgagaatacgctgagaacaaaccctacgaccaccacgatccgtcattacgaagac
caaatggttccgagtatgacgacgtcgttgtttaggggaggggaagaggaatcgtcttca
gaaattggaaattttagggaagatagcagggcggaagttccgattaatcaaggtggagat
ggagatggagagggtcaaacggtgagaactggtaatatgcagccaccgattgatatcacg
agggcgttgagaattacggatgatttgccggcggattcttccaacagttcgagttcaagt
tcgagggaaagagatggaggtgttgtgcctgtgtggtcgccttccacttctagtttttcg
gagacttttgttggtgaagatagctcatatttgcagaggcgtacgcaatctcatcaatta
atcaacaactggaggcggctttcgcaaaccgggtga
DBGET
integrated database retrieval system