Lactuca sativa (garden lettuce): 111909745
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Entry
111909745 CDS
T05352
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111909745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111909745
Spliceosome [BR:
lsv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
111909745
Complex C
U5 SnRNP specific factors
111909745
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
111909745
NCBI-ProteinID:
XP_023761296
LinkDB
All DBs
Position
1:40637632..40647670
Genome browser
AA seq
2371 aa
AA seq
DB search
MWNSNNGQEMWNNSGMIAPPGTGGVPPIAPPGTGGAGGSIPPPPAAQPSYTVLPSPAEAE
ARLEEKARKWMQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRV
YLGALKFVPHAVYKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTM
WIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELEEEEDSAVYTWF
YDHKPLVKTKLINGPSYRKWHLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKA
LNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVR
LCIYHTPMVMYIKTEDPDLPAFYYDPLIHPITAANKDRREKKLLEDDDDEDDFCLPEGVE
PLLTSTPLYTDTTAAGISLLFAPRPFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRV
SYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLN
LLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFR
LGNVDAFQLADGLQYTFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGP
GCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLEL
RAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKS
KADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEE
AVAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELG
LIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQY
LWYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGVWDTGDGQCVVMLQTKFEKFF
EKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYG
LVLDLLLLGLTRASEIAGPPQMPNEFITFWDTKVETRHPIRLYSRYIDKVHILFRFTHEE
ARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSI
TTLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKER
TAVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQEL
LDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQ
QTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLT
LEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKL
WNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRS
GLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQK
VHESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSL
VAESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIG
LDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLS
SQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHT
SVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVI
KGSELQLPFQACLKIEKFGDLILKASEPQMVLFNIYDDWLKSISSYTAFSRLILILRALH
VNNEKAKMLLKPDKTIITEPHHIWPSLTDDQWVKVEVALRDLILSDYAKKNNVNTSALTQ
SEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTKTTNVHGDELIVTTTSPYEQ
AAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQI
SGYLYGVSPPDNPQVKEIRCIAMPPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNE
LPQLSPQDLTFHARILENNKQWDGEKSIILTCSFTPGSCSLTAYKLTPTGYEWGRANKDT
GSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGIKLGTPREY
YHEDHRPTHFLEFSNLEEGDVAEGDREDTFS
NT seq
7116 nt
NT seq
+upstream
nt +downstream
nt
atgtggaatagtaacaacggacaagagatgtggaataacagtggtatgattgctcctcct
ggaaccggaggagtaccaccgatagctcctccagggactggaggtgctggtggttcaata
ccgccgccgcctgctgcgcaaccttcttacactgttttgccgtctccggctgaagcggag
gcgaggctggaagaaaaagccaggaaatggatgcagttgaactcgaagcgatatggagat
aaacggaaatttggtttcgttgagactcagaaggaagacatgccaccggaacatgttagg
aagattatcagggatcatggtgacatgtcatcaaaaaaatatcgtcatgataaacgagta
tatctaggtgctctcaagtttgttcctcatgcagtctacaagcttctagagaacatgcct
atgccctgggaacaggtccgagatgtgaaggtgctatatcatattactggtgcaatcaca
ttcgtgaatgagattccatgggttgttgaaccaatatatctggcccagtgggggacaatg
tggataatgatgcggagggagaagagggatcgaaggcatttcaagagaatgcgtttccct
ccttttgatgatgaagagcctcctttggattatgctgacaatcttcttgatgtggaccca
ctggaaccaattcaactggaattggaagaggaagaagattctgctgtgtacacttggttt
tatgaccataaacctcttgtgaaaaccaaacttatcaatggaccaagttaccgaaaatgg
catctttcactccctatcatggcaaccctccatcgattagcaggccaacttctttccgat
ttaattgaccggaattacttctacttgtttgacatggagtcatttttcacagccaaagct
cttaacatgtgcataccaggaggtccaaaatttgaacctctgtatcgtgacatggagaaa
ggcgatgaagattggaatgagttcaatgacatcaataaactcatcatccgttctccttta
agaactgagtacaggattgctttccctcatctatacaacaacaggccaaggaaagtgagg
ttatgcatatatcatacaccaatggttatgtatattaaaacagaggatcctgatctacct
gctttttattatgatcctttgatacatcccataactgctgccaataaagatcgtcgtgag
aagaaacttctagaagatgatgatgacgaggatgatttctgtttgccagagggtgtagag
cctttgcttaccagtactcccttgtatactgacacaacagctgctggtatctccttgttg
tttgcacctcgtccctttaacatgcgatctggtcgaatgcggcgtgctgaagatattcca
cttgtgtctgagtggtacaaggaacactgtcctccttcatacccggtgaaagtgcgtgtc
agctaccagaagttactgaaatgttttgtgttaaacgagctgcatcatagaccaccaaaa
gcccaaaaaaagaaacacttgttccgttctttacaagccaccaagtttttccaaaccaca
gaactcgattgggctgaagctggtctccaagtttgtaaacaagggtacaacatgctcaac
ctgttgattcataggaagaatcttaactaccttcatcttgattacaacttcaatctgaag
cctgtcaagactcttactacaaaagagcgtaaaaagtcacgattcggaaatgctttccat
ctttgccgtgaaattttgcgtttaacaaaacttgttgttgatgcaaatatacaattccgg
ttgggaaatgttgatgctttccagttggctgatggtctacaatatactttctcacacgtc
ggacagctgaccggaatgtatcgttacaagtataggctcatgaggcagattagaatgtgt
aaggatttgaagcatctgatttattatcgatttaatactgggcctgttgggaaggggcct
gggtgtgggttttgggcgcctatgtggcgggtgtggttgttttttcttcgtggtattgtg
cctttgctagaaaggtggttggggaatttacttgctagacaatttgaggggcgtcattct
aaaggggtggctaagactgttaccaaacaacgtgttgagagtcattttgatcttgagctt
cgtgctgctgtgatgcatgatgttcttgatgccatgccagagggcataaagcaaaataag
gcaagaactattttgcagcatttgagtgaagcatggcgttgttggaaagccaatatcccc
tggaaggttcccggtttacctgttccaattgagaacatgattcttagatatgttaagtcg
aaagctgattggtggacaaatgttgctcactacaatcgtgaacgtataaggagaggtgcc
actgttgataagactgtctgtaggaagaatttggggagattgactcgtctttggctcaag
gcagaacaggaacgtcagcacaactacttaaaagatggtccatatgtcaccccagaagaa
gctgtggctatttacaccaccacagtacattggttggaatcccgaaagttttcacccatt
ccatttccaccattatcttacaagcatgacacaaagcttctcattcttgctcttgagagg
cttaaagaatcctacagtgtggctgtaaggttaaatcagctccaaagagaagaacttggt
ttaattgaacaagcctacgacaatccacacgaagctttatcaagaatcaaacgtcatctc
ctcacccaacgtgcctttaaagaagtaggcattgagtttatggatctgtacagttatctc
attccagtttatgaaatcgagccgcttgagaagatcacagatgcataccttgatcaatat
ctgtggtatgaaggtgacaagcgtcatcttttccccaattggataaaacctgcagattca
gagccaccaccactcttggtttacaaatggtgccaggggatcaacaatttacagggtgta
tgggacactggtgatggacagtgtgttgtgatgcttcaaacaaagtttgagaagttcttt
gagaagattgatttgacaatgctcaacagacttctacgattagtccttgaccacaatatt
gctgattatgtcactgcaaagaacaatgttgtgttgtcgtataaagatatgagtcacaca
aactcatacgggttaatacgtggtcttcagtttgcttcttttgtggtacagtattatggt
ctggtcttggatcttttgcttcttgggttgacccgtgcgagtgaaattgcgggcccacca
caaatgccgaatgagttcattactttctgggacactaaagttgaaacaagacatccgatc
cggttatactctcgctacattgacaaagtgcatattttattccggtttacacatgaagag
gctcgagatcttatccagcgttatcttactgaacatccggatcctaataacgagaatatg
gtggggtataataacaagaaatgctggccaagagatgcaaggatgaggctaatgaaacat
gatgtgaatcttggaagaagtgttttttgggacatgaagaatcgtctacctcggagtatc
acaacactcgagtgggagaacagctttgtttctgtttatagcaaggacaatccaaacctt
ctatttagcatgtgtgggtttgaggtgcggatattgccaaaaataaggatgactcaggag
gcattcagtaacaccagagatggagtttggaacttgcagaatgaacagacgaaagagcgg
acagctgttgcattcttaagagttgacgatgaacacatgaaagtgtttgaaaatcgtgtg
aggcagattctcatgagttcagggtctacaacattcacaaaaatcgtcaacaagtggaat
acagctcttataggtctcatgacatacttccgtgaagcaaccgtgcatacacaagagctg
ctagatcttttagtcaagtgtgaaaataaaatccagacccgtattaagattggtttgaat
tcaaagatgcctagcaggttccctcctgtgatattctacacaccaaaggaaattggagga
cttggtatgttgtctatgggtcacatattgattccacagagtgatctccggtacagtcag
cagacagatgtcggcgtaacacactttaggagtggtatgagtcatgaagaagatcagttg
attccaaatctgtatcgttacatacagccatgggagagtgagttcatcgattcacagcga
gtgtgggctgaatatgctctgaaaagacaagaagcccaatcacaaaacagacgtttaaca
cttgaagatctggaggattcatgggatcgtggaataccaagaatcaacaccttgttccag
aaggatcggcacactctagcctatgacaaaggatggagggtgaggacagattttaagcag
tatcaggtcttgaaacaaaatccattttggtggacccaccaaaggcacgatggtaaactt
tggaacttgaataattacagaactgatgttatccaagcccttggtggtgttgagggtatt
ctcgagcatactttattcaaaggcacatatttccctacatgggagggtctgttttgggag
aaagcctcaggttttgaggagtcaatgaagtacaaaaagctgactaacgcacagagatcc
ggtctgaaccaaattcccaaccgtaggttcacactttggtggtcacctaccatcaatcga
gctaatgtctatgttggtttccaagtccaactcgatttgaccggaatcttcatgcatgga
aaaatcccgaccctcaagatctccctcattcaaatcttccgtgctcatttatggcagaag
gtccatgagagtgtagtgatggatctctgccaagtgttggatcaagaactagacgcattg
gaaatcgaaactgttcagaaggaaaccatccatccaagaaagagttacaaaatgaacagt
tcatgtgctgacattctcctatttgctgcacatcgttggcccatgtcaaaacccagcctt
gttgctgagtcaaaagacgtgtttgaccaaaaagcaagtaataagtactggatcgacgtg
caacttcgatggggtgattacgattctcatgatatcgagcgttacaccagagccaaattc
atggattacacaacagataacatgtcaatctacccttcaccaacaggtgtcatgattgga
cttgatcttgcgtacaatttacattctgcttttggaaactggttccctgggtcaaaacca
ctgcttgctcaggctatgaacaagatcatgaagtcgaatccagctttatatgtgttaagg
gaacgcataagaaaaggattgcagttatactcttcagagccaacagaaccttatttatca
tctcaaaactatggagaaatcttcagcaatcaaatcatctggtttgtggatgatacaaat
gtctaccgtgtaacaatccacaagacctttgagggaaatctcacaacaaaaccaatcaat
ggcgctattttcatattcaacccccgaacaggacaactgtttttgaaggtgattcacaca
agcgtgtgggcagggcaaaagcgtcttggacagctggcgaaatggaaaacagcagaagaa
gttgcagctcttgttcgttctttacctgtagaagaacaaccaaaacaaatcattgtcacg
cgtaagggtatgcttgatccacttgaagtccacttgcttgatttcccaaacattgtcata
aaaggaagcgagttgcagcttcctttccaagcgtgtttgaaaatcgaaaagtttggtgat
ttgattctcaaggcgtctgaaccacaaatggtgttgttcaatatatacgatgattggctg
aagagtatatcgtcgtacactgctttttcaaggctgattttgatcttgcgtgctttacat
gtcaacaatgagaaggcgaaaatgttgctgaaacctgataaaaccattatcactgagcca
catcatatttggccttcactaactgatgaccaatgggtgaaagttgaagttgctttaaga
gatctaattttgtctgattatgcaaaaaagaataatgtcaacacttcagctctcacacaa
tctgagatacgtgatattatacttggtgctgaaatcactccgccttctcagcagagacaa
caaattgctgagatagagaaacaggcaaaagaagctagtcaactgacagctgtcaccacc
aagacaacaaacgttcatggtgatgaactcatagttaccaccacaagtccttatgaacaa
gcggcatttggttccaagacagattggcgtgtgagggcaatatcggcaaccaacctttat
ctccgtgtgaatcacatctatgtaaactcggaggatataaaggaaacgggatatacatac
atcatgccgaagaatattttgaagaaattcatttgcatagcggacttaagaactcagatc
tccgggtacttatatggtgtaagcccacctgataatcctcaggtaaaagaaatccggtgc
atcgccatgccaccgcaatggggtacacatcaacaagtccatctcccctcagctctccct
gaacatgactttcttaacgatcttgaaccgttgggatggatgcacacacaacctaacgag
cttcctcagttgtcaccacaggaccttacgtttcatgctcggatattggagaacaacaag
caatgggatggagagaaatcaatcatattgacttgcagttttactccggggtcatgctct
ttgactgcgtataagctgacaccaacagggtatgaatgggggcgtgcaaataaagatacc
ggaagcaatccgcatggctatctgccaactcattatgagaaggttcagatgcttttgagt
gaccgtttccttggtttctatatggtacctgataatgggccgtggaattacaacttcatg
ggagtgaaacatacggttagcatgaagtatgggataaagctggggactccacgggagtat
tatcatgaggatcataggccgacacatttcttagagtttagcaatctggaggagggtgat
gtcgctgagggggacagggaggatacattctcttga
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integrated database retrieval system
