Lactuca sativa (garden lettuce): 111909942
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Entry
111909942 CDS
T05352
Name
(RefSeq) probable CCR4-associated factor 1 homolog 10
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111909942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111909942
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111909942
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111909942
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
111909942
NCBI-ProteinID:
XP_023761501
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All DBs
Position
1:53215210..53216601
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AA seq
275 aa
AA seq
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MSILLPKSDSVEIREVWDYNLEEEFALIREIVDDYPYIAMDTEFPGVVLRPLAQFKNIND
YNYHTLKDNVDMLKLIQLGLTFSDEDGNLPTCGIEKHCIWQFNFREFNVNEDIFANDSIE
MLKLCGIDFQKNTEEGIDANRFGELLMSSGIVLNGNVCWVTFHSGYDFGYLLKLLTRKEL
PESQMGFFNLIRIYFPIIYDIKHLMRFCNHLHGGLNKLAEILEVKRIGVCHQAGSDSLLT
SHAFKKLKESYFNGSTEKYAGVLYGLGVETEVQNY
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgtctattttgctgcccaaaagcgattccgttgaaatcagggaggtatgggattataat
cttgaagaagagtttgctttgattcgggagattgttgatgattacccttatattgcaatg
gatactgaattccctggtgttgtgcttcgccctttggcacaattcaagaatataaatgac
tacaactatcacacattaaaggataatgttgatatgttgaaattgattcaattgggttta
acattttccgatgaggatggaaatcttcccacttgtgggattgaaaaacactgcatttgg
cagttcaatttcagggaatttaatgttaatgaagacatctttgcaaacgattccattgag
atgttgaaactgtgtgggattgatttccaaaagaatacagaagagggtattgatgcaaat
cgatttggggaacttttaatgtcatctgggattgttttgaatggtaatgtttgttgggtg
acttttcatagtgggtatgatttcggatacttgcttaagctattgacacgaaaggaattg
cctgaatctcaaatggggttctttaatttgatcaggatttacttcccaatcatttatgat
atcaaacatttaatgaggttttgcaatcatcttcatggtggtttgaataaacttgcagag
atcttggaagttaaaagaatcggtgtttgtcatcaagcaggatccgatagtttgcttact
tctcatgctttcaagaaattgaaagaaagttactttaatggatccactgagaagtatgct
ggtgttttatatggtttaggtgttgaaacggaggttcaaaattactaa
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