Lactuca sativa (garden lettuce): 111910189
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Entry
111910189 CDS
T05352
Name
(RefSeq) nuclear pore complex protein NUP96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111910189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111910189
03036 Chromosome and associated proteins [BR:
lsv03036
]
111910189
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
111910189
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
111910189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
PRO8NT
PilN
Motif
Other DBs
NCBI-GeneID:
111910189
NCBI-ProteinID:
XP_023761739
LinkDB
All DBs
Position
1:complement(39115350..39119893)
Genome browser
AA seq
980 aa
AA seq
DB search
MGVDLDALVAESRFKKRKVTLDVYNGSSPCSISREIQTFLPTLQASDYFTEPCLTELAMR
ELMNPGHCQRVQNFTVGRYGYGKVKFFGETDVRWLDLNQIIKFKRHEIVVYEDETTKPVI
GKGLNKAAEVTLLLQITSMKDQVTEKLRVSAERQGAKFISFDSNKKEWKFTVQHFSRFGL
SDDEEEDIAMGDAGSDSDVQEPIPMNDSDGSDPHLLSHSLPSHLGLDPVRMKEMQMVMFP
YEEDEDEELNESFSHHKQHIRSPIHHPSTKITRKTPLALLEYNPGSFGSTPNGSILLTQQ
KKPLPLTITKVQGFKMEVKETPVTKNYSRNIVDAALFMGKSFGIAWGPNGLLLHCNSSTI
NLQKAATDNVVRDENNKVREELIDSCFDSPLNFHKEINHETKEVEVDDYKIKIQKLVCDR
LSLSHICRSYISIIEKQLEVTGLSPSKRVMLMHQVLVWELIKVLFSSREISSLDPDMEAL
PLIRRAEFSYWLQESVMHRVQDEISSLNDSNDLQHLFLLLTGRQLDTAVELSASRGDVRL
ALLLSQAGGSMVNRSDLDHQLNLWKTNGLDFSFIEKDRIKILELLSGNIHEALGDMNIDW
KRFLGLLMWYQLPPDSDLISIFQTYHRLLENGRAPYPVPVYIDEGVVENGWTAGNDRFDL
AYYLMILHGSEDREFGILKTMFSAFASSHDPLDHHMIWHQRAVLEAVGTFSCDDLHVLDM
GFVSQLLSLGHCHWAIYVVLHMSNHEDYPNLQARVIKEILFQYCETWSGQESQREFIEEL
GVPSAWMHEALAVYHGYYGNSVNALEHYLGCGFWQKAHSTFISLVAHSLFLSGKHSEIWR
IATSMEEHKSEIENWDVGAGIYMTFYTLRISLEEDDDAMTEMQVSLKKKNDECKEFFSRL
KESLAVWDSRLPLDARMVYAKMAEEISDLLVGDPGEGSSIEDKLECFSTIFDSPIPDDIL
SCHLQSAVSHFALHLTEAAS
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtggatttagatgctcttgttgctgaatcccgattcaagaaaagaaaagtaaca
ttggatgtctataacggttcttcaccttgttcaatctcacgtgagattcaaactttctta
cctacccttcaagcttctgattattttactgaaccttgtttgaccgaattggccatgaga
gaactcatgaacccaggtcattgccaaagggttcaaaactttacagttggtagatatggt
tatggaaaagttaagttttttggagaaaccgatgtcagatggttagatttaaaccagatt
atcaaattcaaacgacatgagattgttgtgtatgaagatgaaactaccaaacctgtaatt
ggtaagggactcaacaaggctgctgaagtaactctacttttacaaataacctccatgaaa
gaccaagtaacagagaagttgagggtaagtgcagaaagacaaggagcaaagtttatctct
tttgattcaaacaaaaaagaatggaaatttacagttcaacattttagtagatttggtctg
agcgatgatgaagaagaagatatcgcaatgggtgatgccggttccgattccgatgtccaa
gaaccgattccaatgaatgatagtgatggttctgatccccaccttctttctcattctctt
ccttcacaccttggtcttgatcctgttagaatgaaggaaatgcaaatggtgatgtttcct
tatgaggaagatgaagatgaagaattgaatgaaagtttttcacaccataagcaacacata
agatctccaatacatcatccttctaccaaaataactcgaaaaactccattagctttactc
gagtacaatcctggtagttttgggtcaaccccaaacgggtcaattttattaacccaacaa
aagaaaccccttcctttaacaataacaaaagttcaagggtttaaaatggaggtaaaggaa
acaccagtgacaaagaactactcacgaaacatagttgatgctgcattgttcatgggtaaa
tcatttggtatagcgtggggtccaaatggcctccttcttcattgcaattcttccacaata
aatctacaaaaagctgcaactgataacgttgtcagagacgaaaacaacaaagtacgtgaa
gaacttatcgattcatgcttcgattctcctttaaactttcataaagaaatcaaccatgaa
acaaaggaagttgaagttgatgattacaagataaagattcaaaaacttgtatgtgatcgt
ttgtcactttctcatatatgtcgaagctatatatcaatcattgagaaacaactagaagta
accggattatccccttccaaacgtgtcatgttaatgcaccaagttcttgtttgggagctc
ataaaggttcttttctcttcaagagaaataagctcattagatccagacatggaagcactt
cctttgatccgaagagcagagttcagttactggttacaagaatccgtaatgcatcgcgta
caagatgaaatcagttccttaaacgactcaaatgatttacaacatttgtttttgttgtta
actggaagacaacttgatacagctgtcgagctctctgcttcaagaggagacgtgaggctc
gcgttgctgctaagccaggctggcgggtcaatggtcaaccggtccgatcttgaccatcaa
cttaatctttggaaaaccaacggtttggatttcagtttcattgaaaaggacaggatcaag
attttagagttgctttcaggtaatatccatgaggctttaggagacatgaacattgattgg
aaaagatttctaggtttgttaatgtggtatcagcttccacctgattctgatttgatttcc
atttttcaaacgtatcaccgtcttttagaaaacgggcgggccccgtatccggttccggtt
tacatagacgaaggggtagtggaaaacggatggaccgcgggtaatgaccgttttgacctt
gcgtattatcttatgattcttcatggaagtgaagacagggagtttggtatcttaaagact
atgtttagtgcgtttgcttcaagtcatgatccgcttgatcaccatatgatttggcatcaa
cgtgctgttttggaagctgttgggacatttagttgtgatgatcttcatgttcttgatatg
ggatttgtttcacagttgttgtctttgggacactgtcattgggcaatctatgttgtcctc
catatgtctaatcatgaggattatccgaatctgcaagctcgcgttattaaagaaatattg
tttcagtattgtgaaacatggagtggtcaagaaagtcaacgcgagtttattgaagaatta
ggggttccatcagcttggatgcatgaggccttggctgtatatcatggttactatggaaat
tccgttaatgcccttgaacattatcttggatgtgggttttggcaaaaggcacattcgacc
ttcataagtttggttgcacattctctgttcttgtcagggaaacactcggagatatggagg
attgcgacttcaatggaagaacataaatcagaaattgagaattgggatgttggggctgga
atttacatgacattttatacccttagaattagtttggaggaagatgatgatgcaatgact
gaaatgcaggtttctctaaagaagaaaaatgatgagtgtaaagagttctttagtcggttg
aaagagtccttggcagtttgggacagccgtttgcctcttgatgccagaatggtgtatgca
aagatggcagaggagataagtgatttgcttgtaggggatccaggagaggggtcaagcatt
gaggataagttggagtgtttcagtaccatatttgattcacccatccctgatgacattctt
tcatgccatctacagtctgcagtttctcattttgcattgcatctaacagaagcagcctct
taa
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