Lactuca sativa (garden lettuce): 111910285
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Entry
111910285 CDS
T05352
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 5
KO
K05391
cyclic nucleotide gated channel, plant
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
111910285
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lsv04040
]
111910285
Ion channels [BR:
lsv04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
111910285
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GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
CENP-B_dimeris
TEX19
PBP1_TM
Motif
Other DBs
NCBI-GeneID:
111910285
NCBI-ProteinID:
XP_023761868
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Position
1:38761423..38765190
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AA seq
747 aa
AA seq
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MFDNCHTTIYIGGQEERFVRLNVLDSSLSYPSNIMKRCGFNIEGAPPSGHPRTTASKSIK
YVRRRSEGLINFGQTLKTGVSRAVFSEDLKVSENKIIDPQDKTLLLWNKFLVLSCILAVY
VDPLFFYIPVYHNTESCLKIHRSLAHSITTVRTIVDIFYLVRIGLQFRTAYIAPSSRVFG
RGELVIDPAQIARRYMQRYFFVDILSVLPLPQIVVWRFLQNDHGSGVLGTKKILLWIVIV
QYIPRSLRILPLFSELKKTVGVITETAWAGAAYYLVWFVLAGHIFGAFWYLLAVERKSAC
WAQACRDESKCEIEYLYCGHDETEGYKAWLQVAKATLDEHCVESESYGEFDYGIYLQAVQ
SQVDSSEHFPSKYCYCLWWGLRNLSTLGQGLETSTYAKEIIFSIIIAISGLILFALLIGN
MQTYLQSLSVRLEEMRIKRRDSEQWMHHRLLPQELKERVRRYDQYKWVETRGVDEESLVQ
SLPKDLRRDIKRHLCLNLVKRVPLFANFDERLLDAICERLKPSLYTESTFVLREGDPVDE
MLFIIRGRLESVTTDGGRSGFFNRGFLKEGDFCGEELLTWALDPKSAGNLPPSTRTVMAL
TEVEAFALIADEVKFITSQFRRLHSRQVQHTFRFYSQQWRTWAASFIQAAWRRYSRRKIL
ELHRLEEEESDEDYMDDYEEEDEEEVEEDVNEETALIRGRVSSSSFGATMYASKFAANAM
KRVQRKRGVSTGFISLQKPSEPDFGDL
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacaattgtcacaccacaatatacataggtggtcaagaagaaagattcgtaagg
ttgaatgttctggattcgagtttgtcatatccatctaatataatgaagaggtgtggattc
aatatagaaggagcacccccttctggtcatccacgtaccactgcatctaaatcaattaag
tatgtgagaagaaggtctgaaggacttataaattttggccaaactttaaaaaccggagtc
tcacgtgcagtgttttcagaagatctaaaagtctctgagaacaaaataatcgatcctcaa
gacaaaacacttttgttatggaacaagtttctggtgttatcttgcattcttgcagtatat
gtggatcctttatttttctatattcccgtttatcataatacggaaagttgcttaaaaata
catagaagtttagcacactccattacaactgtgagaaccatagttgatattttctacctt
gtacgcattggtctccagtttcgtacagcttatatagctccatcatcaagagtgtttgga
cgtggtgaacttgtcatagatcctgcacagattgcaagaagatatatgcaacgttatttc
tttgttgacattctctctgtgctacctttaccacagattgtggtgtggaggtttcttcag
aatgatcatggttcgggtgttttgggtacaaaaaagattttactgtggattgtgattgtg
caatatattcctagatctcttcgtattctaccgttgttttcagagctcaaaaaaactgtg
ggtgtcattactgaaacagcttgggctggtgcagcttactacttggtttggtttgttctt
gctggtcatatatttggagctttctggtatctgttagctgtggaacgtaagagtgcatgt
tgggcgcaagcatgtcgtgatgagagtaaatgtgagatagaatatctttactgtggacat
gacgagacagaaggatacaaagcttggctgcaagttgctaaagccactcttgatgaacat
tgcgttgaaagtgaatcctatggagaatttgattatgggatttacttacaagctgtgcaa
tctcaagttgattcctctgaacattttccatctaaatactgctactgtttgtggtgggga
ttacgaaacttaagtacactcggtcaggggcttgaaaccagtacatatgctaaagaaatt
attttctcaatcataatcgccatttctgggctcatactctttgctcttctcatcggcaac
atgcagacgtatcttcaatcgctttcggttcgtttagaggagatgagaatcaaaaggcgt
gactctgaacaatggatgcatcataggttgcttcctcaagagcttaaagaacgagtgcga
agatatgatcagtacaaatgggtggaaacaagaggagtagatgaagaaagcttagtccaa
agtctaccaaaagatctcagaagggacatcaaaagacacctctgtttaaatctagtcaaa
agggttccattgtttgcaaattttgacgaaagattactagacgccatatgcgagagactt
aaaccaagtctttacacagaaagcacgtttgttttaagggaaggcgaccctgtcgacgaa
atgttgttcataatccgggggcgtttagaaagcgtcacgacagacggcgggagaagcggt
tttttcaaccgggggtttttgaaagaaggcgatttttgcggagaagagctgttgacgtgg
gcgttggatcccaaatcggcgggtaacctaccgccgtcaacacgaacggttatggcgtta
acggaggtggaagcgtttgcgttgatcgcagacgaggtgaagtttataacgagtcagttt
aggcggcttcatagtcggcaagttcagcatactttccggttttattcacagcagtggcgg
acatgggcggcgagttttattcaggcggcatggaggaggtattccaggaggaagattttg
gaattgcatcggttggaggaggaagaatcggatgaggattatatggatgattatgaggag
gaagatgaggaggaggttgaagaggatgttaatgaagaaactgcgttgattagagggcgg
gtttcgtcgtcgtcgtttggtgcgacgatgtatgcgtccaagtttgcggctaatgctatg
aaacgggttcagaggaagcggggagtgtcgaccggatttattagtcttcaaaagccttcc
gagccggattttggtgatttgtag
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