Lactuca sativa (garden lettuce): 111910291
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Entry
111910291 CDS
T05352
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111910291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111910291
03110 Chaperones and folding catalysts [BR:
lsv03110
]
111910291
03029 Mitochondrial biogenesis [BR:
lsv03029
]
111910291
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsv04147
]
111910291
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
111910291
Messenger RNA biogenesis [BR:
lsv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
111910291
Chaperones and folding catalysts [BR:
lsv03110
]
Heat shock proteins
HSP60 / Chaperonin
111910291
Mitochondrial biogenesis [BR:
lsv03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
111910291
Exosome [BR:
lsv04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
111910291
Exosomal proteins of other body fluids (saliva and urine)
111910291
Exosomal proteins of breast cancer cells
111910291
Exosomal proteins of colorectal cancer cells
111910291
Exosomal proteins of bladder cancer cells
111910291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
CFAP141
Motif
Other DBs
NCBI-GeneID:
111910291
NCBI-ProteinID:
XP_023761872
LinkDB
All DBs
Position
5:complement(288604105..288607767)
Genome browser
AA seq
603 aa
AA seq
DB search
MASITPLSSIGTFGSTNKAVTSSLESLSSFSSISSTPLAHRRQNVVMHRRSTLKVNAMAK
EIYLNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVEL
EDPVENIGAKLVRQAASKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPIQITRGIEK
TTKALVEELKKMSKEVTDSELADVAAVSAGNNEEVGQMIAEAMSKVGRKGVVTLEEGKSA
ENHLYVVEGMQFDRGYLSPYFVTDSEKMSVEFENCKLLLVDKKVTNARDLVGVLEDAIKG
GYPILIIAEDVEQEALATLVVNKLRGSLKIAALKAPGFGDRKSQYLDDIAILTGGTVIRE
EVGLTLENAGSEVLGLAAKVVLTKDTTTIVGDGSTQELVNRRVAQIRNLVEAAEQDYEKE
KLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLA
AKVDAIKETLENDEQKVGAEIVKRALGYPMKLIAKNAGVNGSVVIEKVLASDNYKFGYNA
ATGKYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLTSDAVVVEIKEPEPMVAGNPMDNSG
YGY
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctattactcccttgtcttccattggcacttttgggtcaacaaacaaggcagtc
acaagttcattggaaagcttgtcttcattttcttctatatcttccactcctcttgcacac
agaaggcaaaatgtagttatgcatagaagaagtaccctaaaggttaatgcaatggccaaa
gagatttacttaaacaaggacgggtctgctatcaagaagctgcaggctggtgtcaacaag
cttgcagatcttgtaggagttactctaggtccaaaagggcgaaatgtagtgttggaaagc
aagtatggttctccaaaaattgtaaatgatggtgtcaccgtggctaaagaggttgaattg
gaagaccctgttgagaacattggtgccaagctggtgagacaagcagcttcaaagacaaat
gatttggctggtgatgggacaacaacatcagttgttttagcacaaggcttaataacagag
ggcgttaaggtggtggcagcaggcgctaacccaattcagataacaagaggcattgaaaaa
accactaaagcccttgttgaagaactcaaaaagatgtcaaaagaagttacagatagtgag
ctggcagatgtggcagctgtaagtgcaggaaacaatgaagaagtagggcaaatgattgct
gaagcaatgagtaaagttggaagaaaaggtgttgtcactcttgaagaaggaaagagtgct
gaaaaccacttatatgtagttgaaggcatgcagtttgatcgtggttacctctctccatac
tttgttaccgatagtgagaaaatgtcagttgagtttgaaaactgcaagttgcttcttgtt
gataaaaaggtaacaaacgcaagagatttagttggtgttttggaagatgccataaaggga
ggatacccgattttaatcatagcagaagatgttgaacaagaagcccttgctacccttgtt
gtcaacaagctaagaggttcattaaagattgctgctctcaaggcacctggttttggtgac
agaaaaagtcaatatcttgatgatattgctattcttactggaggaactgtaatcagagag
gaggtagggttgacccttgagaatgctggaagtgaggttctagggcttgctgcaaaagtg
gtgttgaccaaagacacaaccaccattgttggtgatggaagcacacaggagttggtgaac
agacgggtggctcaaattagaaaccttgttgaggcagcagaacaagattatgaaaaagaa
aaattaaatgaaagaattgcaaaattatccggtggggttgctgttattcaagttggagca
caaactgaaactgaactcaaagaaaagaaacttagagtagaggatgctctcaatgcaaca
aaggcggctgttgaggaagggattgtggttgggggtgggtgcacattgttgcgccttgct
gctaaagtggatgccattaaagagactcttgagaatgatgaacagaaagtgggagctgaa
attgtgaaaagggcacttgggtacccgatgaagttgattgctaaaaatgcgggtgttaat
ggaagtgtggtgattgagaaggttttggcaagtgataattataagtttgggtataatgct
gcaaccgggaaatatgaagatttgatggcagctggtattattgatcccacaaaggtggtg
agatgttgtttggagcatgcatcgtcagttgcaaagacattccttacatcagatgctgtg
gtggttgaaatcaaggagccagaaccaatggttgctggaaaccccatggacaactcaggt
tatggttactga
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