KEGG   Lactuca sativa (garden lettuce): 111910645
Entry
111910645         CDS       T05352                                 
Name
(RefSeq) ubiquitin-40S ribosomal protein S27a
  KO
K02977  ubiquitin-small subunit ribosomal protein S27Ae
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03010  Ribosome
lsv04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    111910645
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    111910645
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:lsv03011]
    111910645
   04121 Ubiquitin system [BR:lsv04121]
    111910645
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:lsv04147]
    111910645
Ribosome [BR:lsv03011]
 Ribosomal proteins
  Eukaryotes
   Small subunit
    111910645
  Archaea
    111910645
Ubiquitin system [BR:lsv04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   111910645
Exosome [BR:lsv04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   111910645
  Exosomal proteins of colorectal cancer cells
   111910645
SSDB
Motif
Pfam: ubiquitin Ribosomal_S27 Rad60-SLD Ubiquitin_2 Rad60-SLD_2 Plexin_RBD Dsc3_N DUF2604 Thioredox_PDIA6_C UBL_UBAC1 TBK1_ULD Fer2_3 OTU1_UBXL Ubiquitin_5
Other DBs
NCBI-GeneID: 111910645
NCBI-ProteinID: XP_023762242
LinkDB
Position
4:9707787..9708463
AA seq 153 aa
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLSVLQFYKVDDSGKVQRLRKE
CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA
NT seq 462 nt   +upstreamnt  +downstreamnt
atgcagatcttcgtgaaaaccctaacgggtaagacgatcacgttggaggtagagtcctct
gacacgatcgacaatgtgaaagcaaagatccaggacaaggagggcatcccaccagaccaa
caacgtctcatcttcgccggaaagcagctcgaggacggcagaaccctagccgactacaac
atccagaaggagtcaactcttcaccttgtcctccgcctccgtggtggcgcaaagaagcgt
aagaagaagacctacaccaagccaaagaagatcaagcacaagcacaagaaggtgaagttg
agcgttttgcagttctacaaggtcgatgattcagggaaggtgcagcggttgaggaaagag
tgccctaatgctgagtgcggagctggaacgtttatggcgaaccatttcgataggcactac
tgtggtaagtgtggacttacctatgtttaccaaaaggcttga

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