Lactuca sativa (garden lettuce): 111911268
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Entry
111911268 CDS
T05352
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111911268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111911268
03012 Translation factors [BR:
lsv03012
]
111911268
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111911268
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111911268
Translation factors [BR:
lsv03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111911268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
Dicer_dimer
AAA_11
PhoH
T2SSE
Myosin_head
Motif
Other DBs
NCBI-GeneID:
111911268
NCBI-ProteinID:
XP_023762837
LinkDB
All DBs
Position
8:61234956..61240984
Genome browser
AA seq
1190 aa
AA seq
DB search
MKDIPRPSSSGSVYVPPHHRLRSVVTTSAPAPAPAPVPVPVPVPVPAPLPDISSTPHAVL
DNKTSFVSSSQSNINNRFTVPYPYLPPHQIIKSQAVAVSQEGPRREFDFSFHPGAYTSDI
ESWKWKLTTLINSKDKQELVSREKKDRRDYEQISALATSMGLHSHLYAKVLVISKVPLPN
YRFDLDDKRPQREVALPEGLQKRVDAHLKEYLSFKAESMKGSQDDLISKTNSNGNIGSDE
GFFELPELSSQGKAAIEKLLWRRSVQLQAEQQAWQESSDGWRMQQLRKNLPAYKERNTIL
NAISQNQVVIISGETGCGKTTQIPQFILESEIDSFRGATCSIICTQPRRISTMSVSERIA
TERGEKLGGTVGYKVRLEGIKGRDTRLLFCTTGILLRRLLVDRNLKDVTHVIVDEIHERG
MNEDFLLIVLKELLPRRPELRLVLMSATLDANLFSTYFGGVPVVQIPGFTHPVHSYFLED
VLETTGYRLTAENQIDDYGQERTWKSNKQFIRKRKSQIASAVEEALGYADFRGYSPQTRD
SMSCWNPDCMGFNLIEFLLLSICGSEKPGAVLVFMTGWDDISSLKEKLQANHLLGDANRV
LLLACHGSMASSEQRQIFEKPENGVRKIVLATNMAETSITIDDVVFVIDCGKAKETSYDA
LNNTPCLLPAWISKVSAKQRRGRAGRVQPGECYHLYPRCVFNAFAEYQLPEILRTPLQSL
CLQIKTLKLGSISEFLSKALQSPELLAVQNAIEYLKIIGALDENEDLTVLGRYLTMLPVE
PKLGKMLILGAILNCLDPILTVVAGLSVRDPFLAPLDKKELAEAAKAQFSRDHSDHFALV
RAYEGWKVAEHALGGYEYCWKNFLSAQSMKAIDSLRREFLSLLKDTGLVDGNMVIFNAWS
YDENLIRAIICYGLYPGISSIVHNEKSFSLKTMEDGQVLLHSNSVNSRDLRIPFPWLVFN
EKIKVNSVFLRDTTAVSDSVLLLFGGSISKGDIDGHLKMLGGYLEFFMEPSLAEMYLNLR
KELDELFQYKLLNPKLDLHTHHELLSAVRLLLPEDQSIGRFVFNRQVLYNNSKPYIASVP
PPPPPPQQPQTQPPHLLPVSRVESGPGGDNSKSQLQTLLTRAGYPAPIYRTSQLPNNQFR
SVCEFNGLQITGHPCHNKKQAEKDAAAEAIDHLIGGTHASMLKKSKTNHN
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacataccgcgtccgtcttcgtccggctccgtgtacgtgcctccgcaccatcgc
cttcgctccgtcgtcactacctctgcccctgcccctgcccctgcccctgtccctgtccct
gtccctgtccctgtccctgcccctctacccgatatctcatctactccccatgctgttctt
gacaacaaaacctcttttgttagttcatctcagagcaatattaacaataggtttacagtt
ccttatccttacttgcctcctcaccaaattataaaatctcaggccgttgccgtctctcaa
gaaggcccccgtcgcgaattcgatttctctttccatcctggtgcttacacatctgatata
gaatcttggaagtggaagctaacaacactaataaacagcaaggataaacaagaactggtt
tcaagggaaaaaaaagacaggcgtgactatgaacaaatatcagccctcgcaactagcatg
ggtttgcacagccatttgtatgccaaagtgcttgtcattagcaaggttccattgccaaac
taccgatttgatcttgatgataaacgccctcagagggaggtggccttgcctgaggggttg
caaaagagagttgatgctcatttgaaagaatatctttcttttaaggctgaaagtatgaaa
gggtctcaagatgatttgatttcaaagacaaatagcaatggtaacattggtagtgatgaa
ggtttctttgagctaccagagttgtcatcacaaggcaaggctgccattgagaaactcctt
tggaggaggagtgtgcaactgcaggctgaacaacaagcttggcaggaatcttcagatggt
tggaggatgcaacagcttcgtaaaaatctccctgcttacaaagagagaaatacaatatta
aatgccatttcacagaatcaggttgttatcatctcaggtgaaaccggttgtgggaaaaca
acacagattcctcagtttattctagaatcagagattgattcttttcgtggggccacatgt
agtatcatatgcactcaacctagacgtatttccaccatgtctgtttcagaaagaattgcc
acagagagaggcgaaaaattgggtggaactgttggatataaagttcggttagagggtata
aaaggaagagacacccgacttctgttttgcactacaggaatcttgttgagaagattactt
gttgatagaaacttgaaagatgttactcatgttattgtagatgagattcatgaacgtggc
atgaatgaagattttctgcttattgttttgaaagaattacttcctagaaggccagaatta
aggcttgttttgatgagtgcaacattggatgcaaatcttttttcaacctactttggtggt
gttccagtggttcagattccgggttttacgcaccctgtgcattcctattttcttgaagat
gttctggaaacaactggatacagattgacagcagagaatcaaatcgatgattatggtcaa
gaaagaacatggaaatcaaataaacaatttataagaaaaaggaaaagtcaaattgcttca
gctgttgaggaggcacttggatatgctgactttagaggctatagtccacaaacacgggat
tctatgtcatgttggaaccctgattgcatgggattcaatctcattgagtttctgctattg
agtatatgtgggagtgaaaagccaggggcagttttggtatttatgactgggtgggatgac
ataagctctttgaaggaaaagttacaagcaaatcatcttttaggggatgcaaatcgagtt
ttgttgcttgcatgtcatggctctatggccagctcagaacagagacaaatatttgaaaag
ccagaaaatggggtgagaaagatagttttggctacaaatatggctgaaacaagtatcaca
atagatgatgttgtttttgttattgattgtggaaaagctaaagaaacatcatatgatgct
ttgaataataccccttgtctccttcctgcttggatatcaaaagtttctgctaaacaaagg
cgaggtcgagcagggcgtgttcagccaggagaatgttaccatttataccctcgatgtgtc
ttcaatgcttttgcagaatatcagttgcctgaaatactgagaacacctcttcagtcactt
tgtcttcaaataaaaactttaaaacttggaagtatttctgaattcttatctaaagctcta
caatcacccgagttattagcagttcaaaatgccattgagtatctcaagattattggtgct
ttagatgagaatgaagatctaactgtgctcggtcgttatttgacaatgcttcctgtggag
ccgaaacttggaaaaatgttgattttgggagcaattcttaattgccttgatccaatactc
acagttgttgctggacttagtgtcagagatccttttttagcacctttagataaaaaagaa
ctggcggaggcggcgaaagcgcaattttcgcgagatcatagtgaccattttgcccttgtg
agggcgtatgagggttggaaagtggctgaacatgcacttggtgggtatgaatattgttgg
aagaattttctgtctgctcagtccatgaaagctattgattctttgagaagggagttttta
tctttgcttaaagatactggtcttgtcgatggcaatatggtcattttcaatgcttggagt
tatgacgaaaatctcattcgcgcaatcatctgctacggcttgtatcccggaatttcctcc
attgtccataatgaaaaatcgttctcgctgaaaaccatggaggatggtcaggtgctttta
cactcgaactcggttaattcccgggatttgagaattccattcccgtggttggtctttaat
gaaaagatcaaagtgaactctgtttttctccgagatacaactgctgtttccgattccgtc
ctgctactgttcggtggaagcatctcaaaaggcgatattgatgggcacttgaaaatgttg
ggaggatacttggagttcttcatggaaccttcattggctgaaatgtatctcaacttaaga
aaagagctcgatgagttattccagtataaactattgaatcccaaattggatttacacaca
caccacgagcttttatccgccgtgcgcttactcctcccagaagatcaatccattggcaga
ttcgtattcaaccgccaggttttatacaacaattcaaaaccatacatcgcgtctgtacct
ccaccaccaccaccaccacaacaaccacaaacacaaccgccacacctgctgccagtgtcc
agggtggaaagtggtccaggtggcgacaattcaaaaagtcaactccagacactactgacc
cgggcagggtaccctgccccaatctaccgaacaagccagctgccaaacaaccagtttagg
tcagtttgtgaattcaatggcttgcagattacaggccacccttgtcacaacaagaaacaa
gctgaaaaagatgctgcagccgaggctatagatcatctcattggtgggacccacgcgtca
atgcttaagaaaagcaagacaaaccacaactag
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