Lactuca sativa (garden lettuce): 111911272
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Entry
111911272 CDS
T05352
Name
(RefSeq) nuclear-pore anchor
KO
K09291
nucleoprotein TPR
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111911272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111911272
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
111911272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
BRE1
Motif
Other DBs
NCBI-GeneID:
111911272
NCBI-ProteinID:
XP_023762840
LinkDB
All DBs
Position
8:complement(61472615..61480972)
Genome browser
AA seq
1999 aa
AA seq
DB search
MPLFLSDEEYARCSHDPSLIAQKADAYIRELYNQLETEKAQYDASSITAEQTCSILEQKY
VSLKSEFTTLQSQHSQLNSTLEERVSELAQLQADKHQIYLQSIGKDGEIERLSLEASELQ
KSKSQLLQMIEHKDLEINEKNSSIKGYLDKIVSLTDNTSSKESRTRELEAELARAHTSLA
RLTQEKELVERHNVWLNDELTTKVNNLLELRKTHNELEADMSSKLAELERNYNDTRTSLK
WKDDRVKELESKLEALQEELCLSKDTAASTEERLSAELSTVNKLVELYKENSDEWSKKAG
ELEGVIKALETHANQVEKDYKEKLEKETSARKEFESEVSNLKAKLEKLEAELENSRNSDQ
FNLLQMTTFNPNSYKDSMENDNNLMIVPSIPAGISGTALAASLLRDGWSLVKMYEKYQEA
VDALRHEQLGRKQAESILKRVLHEIEEKAEVILDERAEHERMVEAYDMLNEKLQHSLSEQ
TLLERTLQELKAEIRRHERDYNLAQKENKDLQREVTVLLKECRDIQLRCSSVNYNSAIED
TSQLVDQDGDSVLSERLLTFKDINGLVEQNVQLRGLVRLLTEQIESKEMELKEQFEKEFQ
KHNKETASKVDAVLARAEEQAGMIESLHTSVAMYKKLYEEEHKRHLLPLESPDTTHMERR
SNVTLFLEGSNDASKRAQDRAYEKIKALEEELSVLRGEIITLKSQRDKSALEATFAHEKL
ERFMKDFEHQREETNGVLARNVEFSQLIIDYQRKIREASESLHTAEDLSRKLNMEVSVVK
REKEILINSEKRAFEEVRQLSERVHQLQATLNTVQTTEEVKEEARSAERMREGDYVKRTE
REWADAKKELQEERDNVRKLTLEHDSAMRTAMQRIEEMGKELANALHAVADANAKAAAAE
ERLLKFEKTKSSEANDENAPTQEDEMRVLKEEIEKLRVEAKTNKDHMLQYKSIAQVNEAA
LKQMEASHENFKVEAEKLKKSLEEEILSLKEEVNRLQEGYNLKAKEAASASVSQEEALVN
TLSEISKLRDECTAKNLCIESLESQVSAMKVDLEKEHQKWRISQDNYERQVILQSETIQE
LTKTSQALGSLQQEASELRKVSDILKIENEELKSKWETEKKVLEDSKDRAEKKYNEINEQ
NKILHDQLEALHIKGAEKSLGGAQSSDTFDDAGLQNVVKYLRRSKEIAETEISLLKQEKL
RLQSQLESALKSQETAQNLLRAERENSRSVHFTEEEFKALQLQVREMNLLRESNVQLREE
NKHNFEECIKLRQSTHNVRAEVENLESLLGERVNEVEACKREIEMLKKEKNELQIKVNEF
VEKFRDMDPEEYGRMCADLQDLKVKVLEKDGNLEEVKKAVLEKQEVIVKLEQEIGKSKVE
LDERESRLNSIGETETFLKGEVERLKKNYFLLRRRNDIVVKEKEELLKKNQELSKDLAAD
SSQVKKSNVDSSSVEQAAVTREREEKDTRIQMLEKTVEKLREESREREEKDKRIQMLEKV
IERLREDVRKGKDEVRMEKEKAKNQKSDKGIVDSSKLADDLEKHKQALKSLSEEIEKMNS
GDSIDELAAACLLAVENFEQVANQVSGEYGLPVTTTTTESPPADSCAPPQAVPPPQNTIE
ESAKPASSDKAKVEPRKIARRLVRPRIVKPDPAKSKGDVDMSDSVATNSQQSLSVRKRPS
EGQEGSQSNARETTGSDVAAPIVKKSRGSEPPPEAQNMTDAPESVIPEEAPPINVVDESQ
TLKEDMDTGREEEVETGEEQGVEDVQTESQNEIGEAEVSEDQPKEGEVAAGEVGSEPEEG
EMVSDAVVGNQETGEGQLVERGRRSASPMPVEDDMAGGEDTLGEMEIGSPLLTMEETEDK
NEEGEIEVEETTPESSMDNKVNNDANDEEAAVIDHVEKSTTTTSALTTETGGSTTEVKPE
ESAGTGTGTAETSNSTTINLNERARLRSLQRLAGTNTSPPPPAAARGRGRQAPRGRSVRG
GRAAGRGGAGQNPASQGGM
NT seq
6000 nt
NT seq
+upstream
nt +downstream
nt
atgccgttgttcttgtccgacgaagagtacgctcgctgctcccacgacccttctttgatt
gcgcagaaagccgacgcctatatcagagaactctacaatcaactcgagactgaaaaagct
caatacgatgcttcctccataaccgccgaacagacttgttcgattctcgagcaaaaatat
gtatctctgaaatctgaatttactacgcttcaatcgcaacactcgcagctcaattctact
cttgaagaacgcgtctctgagctcgctcagcttcaagcggataagcatcaaatctatctc
caatctattggcaaggatggtgagattgaaagactgtcattagaagcttcagagcttcaa
aaatccaaaagtcagttgctgcaaatgattgagcataaggatctagagattaatgagaag
aacagtagcatcaagggttatcttgacaagattgtttccttgactgacaatacttcctct
aaagaatcacgcaccagggaacttgaggctgagctggcacgtgctcacacttctttagct
cgattaactcaagagaaagaattagtcgaaaggcataatgtttggcttaatgatgagttg
accactaaagtcaacaatcttttggagctcagaaagacacataatgaactagaggcagac
atgtcttctaaacttgcagagttggagagaaactacaatgacacgcgtacttcattgaaa
tggaaagatgacagagtaaaggagctggaatcaaagctggaagctttacaagaagaatta
tgtttgtctaaggatacagctgcgagtactgaagaaagattgtctgctgagctgtcaact
gtaaacaagcttgttgaactttacaaggagaattcagatgaatggtctaaaaaggcagga
gagcttgaaggtgttatcaaagctttagagacacatgcaaatcaggttgaaaaggattac
aaagaaaaactcgaaaaggaaacatctgctagaaaagagtttgaaagtgaagtttcaaat
ttaaaagcaaaacttgagaagttagaagcagaattggaaaattccagaaactcagatcag
tttaatcttcttcaaatgaccactttcaacccgaattcatataaagactctatggagaat
gacaataatctaatgattgttcccagtattccagctggcatttcagggacagcattagct
gcttctcttcttcgtgatggttggagtttagtcaaaatgtatgagaaataccaagaagct
gttgatgctttgagacatgaacaattgggaagaaaacaggcggaatctatactaaaaaga
gtattgcatgaaatcgaagagaaagctgaggtcatattagatgaaagagctgaacacgaa
agaatggtggaagcatatgatatgttaaatgaaaaactacagcattctctttctgaacaa
actttacttgagagaacactacaggagctgaaagctgaaataagaagacatgaacgtgac
tacaatttagctcaaaaggagaacaaagaccttcagagagaggtgactgttttgctaaag
gaatgtcgtgacatacagcttcgttgtagttctgttaattacaattctgccattgaagac
acgagtcaactcgttgaccaagatggtgactctgttttgtctgagaggttgttgactttc
aaggatataaacggattagttgagcagaatgtacagcttcgggggctagttcgtctttta
actgaacagattgagagtaaagaaatggagttaaaggagcaattcgagaaggagttccaa
aaacataataaagaaacagcttctaaagttgatgcagttttagctagagcagaagaacaa
gcaggaatgattgagtcacttcatacttctgttgctatgtataaaaagctatatgaagaa
gaacataaacgccatcttttacccctggaatctccagatacaacacacatggagagaagg
agcaatgttactctctttttagaaggttctaacgatgcttcaaaaagagcacaagatcga
gcttatgagaaaattaaggctcttgaagaagagctctcagtgttaagaggcgagatcatt
acattgaaatcacaacgtgacaagtcagctttagaagcaacttttgcacatgagaaactc
gaaaggttcatgaaagattttgagcatcagagggaagaaacaaatggggttttagcaaga
aatgttgagttctcacagctgataatcgattaccaaagaaagattcgtgaagcttccgag
tctttgcacactgctgaagatttatcccgaaaactaaacatggaggtttctgttgtgaag
cgtgagaaagaaattttaatcaactctgaaaagagagcatttgaagaggttcgtcaactt
tctgagagagttcatcagctgcaggctactttgaatactgttcaaactactgaagaagtg
aaagaagaagcgagaagtgctgagcgtatgcgtgagggcgattatgtcaaacgtacagaa
agagaatgggcagatgctaaaaaggagcttcaagaagaacgtgataatgtccgaaagctc
acacttgaacatgattcagccatgagaacagctatgcaaagaattgaagaaatggggaaa
gaattggcaaacgcgttacatgctgttgcagatgctaatgctaaagcagctgctgcagag
gaacgattattgaaatttgagaaaacaaagagttctgaagcaaatgacgaaaacgcccct
acccaggaagacgagatgcgggttcttaaggaagagattgagaagttaagagttgaagca
aaaaccaacaaagatcacatgctgcagtataagagtatagcacaggtgaatgaggctgca
ttgaaacagatggaagcttcacatgagaatttcaaagttgaagctgaaaagttgaagaag
tcactagaagaagaaattttatcacttaaagaggaggtgaatcggcttcaagaagggtat
aatttgaaagcaaaagaagcagcttctgcttctgtttcacaggaagaagctcttgtgaac
acattgtcagagatttccaaattgagagatgaatgtactgctaaaaacctgtgtatcgag
tccttagaatcacaagtgtcagccatgaaagttgatttggagaaagagcatcaaaaatgg
cgtatttctcaagataattatgaacgccaggtcatacttcagtctgaaacaattcaggag
ttaacaaaaacatcacaagcattgggttccttacaacaagaagcatctgagctccgtaag
gtttcagacattctcaaaatcgaaaacgaagagctgaaaagcaagtgggagacagaaaag
aaggttctagaagattccaaagatagagccgaaaagaagtataatgaaatcaacgaacag
aacaagattttacacgatcagctcgaggccttacacattaagggagcagaaaagagtctt
ggtggtgctcagtcttctgatacatttgatgatgcgggattacagaatgtggtgaagtat
ttgaggcgttcgaaagagattgctgaaactgaaatctctttgttgaaacaggaaaagctt
cggttacaatcacagcttgaaagtgctttgaagtctcaagaaacagctcaaaatttgctt
cgtgctgagagggagaattctagatcagttcatttcacagaggaggagttcaaggcgttg
cagcttcaagttagagaaatgaatttgcttcgtgaaagtaacgtacagcttcgagaagaa
aacaaacataactttgaggaatgtatcaagttacgtcaatctactcataatgtgagggct
gaagttgaaaatttggaaagcttgcttggtgagagggtgaatgaggtggaggcttgtaag
agggagatagagatgcttaagaaggagaaaaacgagttgcagattaaagtgaatgagttt
gttgaaaaattcagagatatggatcctgaagaatatggtcggatgtgtgcggatttgcag
gatttgaaggtgaaagtgttggagaaagatggaaacttggaggaggttaagaaagctgtt
ttggagaaacaggaggtgatagtgaaattggaacaggagattggtaaaagtaaagtggaa
ttagatgaacgggaatcgaggttaaacagcataggtgaaaccgagacgtttttaaaagga
gaagttgagaggctgaagaaaaattattttctgttgagacgtagaaatgacattgttgtg
aaggagaaggaggaattattaaagaagaatcaagaactttctaaagatttagctgctgat
tcgagccaagtgaaaaagagtaatgtggatagcagttcagttgaacaagcagccgtgact
agggaaagagaagagaaagatacgagaattcagatgctggagaagactgttgagaagtta
agagaggagtcaagggagagagaagagaaagataaacggatacagatgttggagaaagtt
atcgaaaggcttagagaagacgtgaggaaaggaaaagacgaagttagaatggagaaagag
aaagcaaagaatcaaaagagtgacaagggaattgttgattcatcaaagctggcagatgac
ttggagaaacataaacaggcgttaaagagcctttcggaggaaatcgaaaagatgaattcc
ggcgactccattgatgaacttgctgcagcttgtcttcttgctgttgaaaacttcgaacaa
gtcgccaatcaagtttccggcgagtatggacttccggtcaccaccaccaccaccgagtca
ccgccagccgactcctgtgcaccaccgcaagctgtccctccacctcaaaacacaatagaa
gaaagtgcaaaaccagcatcaagcgataaagcaaaagtggaaccacgtaaaattgcacga
aggctagttcggcctcgtatcgtaaagcctgatccagcgaagtcaaagggcgatgttgac
atgtcagattctgttgcaaccaactcacaacagtccttgtctgtacgcaaacgtccttca
gagggacaagaaggatcacaatcaaatgcgcgtgagaccaccggttccgatgtggcagcg
ccaattgtcaagaaatccagaggctcagaaccaccacccgaggctcaaaacatgacagat
gctcccgaaagtgtaatacccgaagaggctcctccgatcaatgttgtagacgaaagtcag
actttaaaagaagatatggatacaggaagggaagaggaggttgagactggtgaagaacag
ggggttgaagatgttcaaacggaatcacagaatgaaattggtgaggcggaagtttctgag
gatcaaccgaaggagggtgaggtggcagcaggtgaagtgggaagtgagcctgaagaaggt
gaaatggtgtcggatgctgttgtcggtaaccaagaaaccggggaaggtcagttggttgag
cgtgggaggaggtcggcttcacctatgccggttgaagatgacatggcaggaggagaggat
acgctcggggagatggagattggttctccgttgttgacaatggaggagactgaagataaa
aatgaagaaggtgaaatagaagtggaggaaactacacccgagagctcaatggataataag
gtgaataacgatgcgaatgatgaagaggctgctgttattgatcatgttgagaaatcaaca
acaacaacttctgctttgactactgaaactggagggtcaacaacagaagtgaaaccagaa
gagtcagctggtactggtactggtactgctgagacaagtaattcgacaacaattaatttg
aatgagagagcaaggctgaggtctttacagagactggccggaacaaatacttcacctcct
cctcctgctgccgccaggggtcgtggacggcaggccccacgtggacgaagtgttcgtggt
ggacgtgctgctggccgtggtggtgctggtcaaaaccctgcttctcaaggaggaatgtga
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integrated database retrieval system