Lactuca sativa (garden lettuce): 111911975
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Entry
111911975 CDS
T05352
Name
(RefSeq) protein indeterminate-domain 5, chloroplastic
KO
K25870
zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsv03000
]
111911975
Transcription factors [BR:
lsv03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
111911975
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
C2CH-4th_BIRD-IDD
C2H2-2nd_BIRD-IDD
C2CH-3rd_BIRD-IDD
zf-C2H2
zf-met
zf-C2H2_jaz
zf-C2H2_6
zf-C2H2_STOP2_C
DUF7128
zf-C2H2_4
HCV_NS5a_C
Motif
Other DBs
NCBI-GeneID:
111911975
NCBI-ProteinID:
XP_023763510
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Position
5:complement(86813355..86817026)
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AA seq
590 aa
AA seq
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MAAASSSTSFYGARSDEEQHVSSIPTSSSTIQSAAAQQKKKRSLPGTPNPDAEVIALSPK
TLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEVKRKVYLCPEPSCVHHD
PSRALGDLTGIKKHYSRKHGEKKYKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFS
RRDSFITHRAFCDALAQESARHPSALGSIGSHLFGSHLSNSMNLGLSQLHDQNHQSSTTN
MLSLGNANFEQVMLPPSQTPLFPQSQQQQMANSSSPFFLSDPNQGLNQVFDYDQQSQQHG
LMGNKPNIHGLMQLPDLHSNNTKITPNLFNLGFFSGNSNPTNGLKNSENDTQNNSNMSSS
GFMLPDHQFNTGGGSHDHMFLNSNNPHQESPMTPHMSATALLQKAAQMGSTTSNNNATTL
LKSFGSSSTSTVGGDAKTHTGRQSLSATSFDVRGDQSLQSEMESDNQLQGLMNTLRSGGA
PSMFDGYGGNRNRNMNFGNMNEATKFNQNNFSLSVGNSNRTTLDFLGVGYSQRDQQQQQQ
QTQTQTQTQQPQQQQQHHGRINISSLDPKMDSSSTQGSHAHGGSSKLQGK
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcttcttcatcaacttcattttatggggcaagatcagacgaagaacaacat
gtttcttcaatacctacatcttcttcaactattcaatcagcagcagctcaacagaagaag
aagagaagccttccaggaactccaaatccagatgcggaggtgatagcgttgtcaccaaag
accctaatggcaacaaaccggtttatatgtgaagtatgcaacaaagggtttcaaagagaa
caaaacttgcaactacatagaagaggacacaatctaccatggaagctaaagcaaaaaagc
aacaaagaagtgaagaggaaagtgtatctatgtccagagccttcatgcgtccaccatgac
ccttctcgtgcattaggagacctcactggaatcaagaaacactattcaagaaaacatggc
gagaagaaatacaagtgcgagaagtgctccaagaaatatgctgttcaatccgactggaaa
gctcactctaaaacttgtggcacccgtgaatatcgatgcgattgtggcacccttttctca
aggcgtgacagttttatcacgcatcgggctttttgtgatgcattagctcaagaaagtgca
aggcatccgtcagctcttgggtctattggtagccatctttttggaagccatcttagtaat
tcgatgaatttaggtctttcccaattacatgatcaaaaccaccaatcatcaactacaaac
atgttaagcctagggaatgcaaacttcgagcaagttatgcttccaccgagtcaaacacct
ctgttccctcaatcccaacagcaacaaatggcgaattcatcgtctcctttctttttatct
gatccaaaccaagggttgaaccaagtgttcgattatgatcaacaaagccaacaacatggg
ttaatgggaaacaagccaaacattcatgggttgatgcaacttcctgatttacatagcaac
aacaccaaaatcactcctaatcttttcaacttagggttcttctcaggtaatagtaatccc
acgaatggtttgaaaaacagtgagaacgatacccaaaataactcgaatatgtcatcttct
ggtttcatgcttcctgatcatcaattcaacaccggaggtggaagtcatgaccacatgttc
ctcaacagtaataatccgcatcaagaaagtccaatgacaccccacatgtctgctacagcc
ttgctgcagaaggcagctcagatgggttctaccacaagcaacaataacgcaaccacactg
ttgaaaagcttcggaagctcttccacgagcactgttggtggtgatgcgaaaacacataca
ggtcgccaaagtctatctgccaccagctttgatgttagaggagaccagtctttacaatcg
gagatggagagtgataatcagctacaaggacttatgaacactcttagaagtggtggagct
ccatctatgtttgatgggtatggagggaatcgaaatagaaacatgaattttgggaacatg
aatgaggctaccaagtttaatcaaaacaacttctctttaagcgttggaaactcgaataga
acgactcttgattttctaggtgtgggttactcgcagagagatcaacaacaacaacaacaa
caaacacaaacacaaacacaaacacaacaaccacagcagcaacaacaacaccatggtcgt
atcaacatcagttcactggacccaaaaatggattcatcgtcaacacagggaagtcatgca
catggtggatcatccaaactgcaaggaaaatga
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