KEGG   Lactuca sativa (garden lettuce): 111912055
Entry
111912055         CDS       T05352                                 
Name
(RefSeq) uncharacterized protein LOC111912055
  KO
K12828  splicing factor 3B subunit 1
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111912055
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lsv03041]
    111912055
   03036 Chromosome and associated proteins [BR:lsv03036]
    111912055
Spliceosome [BR:lsv03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    111912055
 Complex B
    111912055
 Complex C
   U2 SnRNP specific factors
    111912055
Chromosome and associated proteins [BR:lsv03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    111912055
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_2 HEAT_ECM29 Htt_N-HEAT_1 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N UME
Other DBs
NCBI-GeneID: 111912055
NCBI-ProteinID: XP_023763573
LinkDB
Position
6:complement(90902378..90907835)
AA seq 1269 aa
MDPVDAEIAKTQEERKIMEAALAPNSITFDTELYDGSNRFQDYNREIPANDDEENADAMD
NEVARKLASYTAPRSLLNDMPRGGDDDESLGFKKSQRIIDREDDYRRRRLNQVISPERHD
AFANGDKTPKPETRTYADIMREAALKREKEETLKVIARRKKEEEENKAAGKEREREPAAS
QPSQKRRNRWDQNQDNSDAKKAKSGSDWDMPDSTPGIGRWDATPTPGRIGDATPSLSRKN
RWDETPTPGRLADSDATPAGGATPGATPAGMAWDATPKLSGLATPTPKRQRSRWDETPAT
MGSATPGGATPAAAYTPGVTPVGGVELATPTPGAINLRGAITPEQYNLLRWEKDIEDRNR
PLTDEELDTMFPQEGYKILEPPPSYVPIRTPARKLLATPTPLGTPLYSIPEENRGQHFDV
PKEMPGGLPFMKPEDYQYFGALLNEEDEEELSPDEQKERKIMKLLLKVKNGTPPQRKTAL
RQLTDKARELGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILV
VIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVA
SALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLND
ENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPL
MDAIYASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFR
NFWVRRMALDRRNYRQLVDTTVEIANKVGVPDIVGRIVEDLKDESEPYRRMVMETIEKVV
ANLGASDIDPRLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQRVKPYLPQICGT
IKWRLNNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILG
ALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREW
MRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVA
IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLED
ALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIE
GMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPVLEDEGENVY
SRPELTMFI
NT seq 3810 nt   +upstreamnt  +downstreamnt
atggatccggttgatgcagaaattgcaaagacacaggaagaaaggaagattatggaggca
gccctagcgccaaactccattacttttgatactgagctttatgatgggagcaatcggttt
caggattataacagggagattcctgctaatgatgatgaagagaacgctgatgccatggat
aatgaggttgctaggaaattagcttcttacactgccccaaggtctctcttgaatgatatg
cccagaggtggagatgatgatgaatctttggggtttaagaaatcacagaggattatcgac
agggaggatgactacagaagaagaaggttgaatcaggtcatctcaccagaaagacacgat
gcttttgcaaatggtgacaaaactccaaaacctgaaacaagaacatatgctgatattatg
agggaagctgctttgaaaagagagaaagaggagacattgaaggtgattgctaggaggaaa
aaggaagaggaagagaacaaagcagctggaaaggaaagggaaagggaaccagctgcttca
cagccatctcaaaagagaagaaacagatgggatcaaaatcaagacaattcagatgcaaag
aaagcaaaaagtggttctgattgggatatgccagactcaactccagggattggaagatgg
gatgctactccaactccgggtagaatcggcgatgccactccttctttatcccggaaaaac
agatgggatgaaactcctacacctggtcgtttggctgattccgatgctacccctgctggt
ggggccactccaggggccactccagctggaatggcatgggatgctactccaaagctctct
ggccttgctacccctacaccaaaacgccaaagatcaagatgggatgaaactccagccacc
atgggaagtgctacacctggcggtgctacacccgcagccgcctacacacctggcgtgaca
cctgtcggtggggtcgaactcgccaccccaactcccggagctataaatctccgtggcgcc
atcacacctgaacagtataacttactaagatgggagaaagatattgaagacaggaatcgc
cctttaacagatgaagaacttgacaccatgtttcctcaagaaggctacaagattcttgaa
cctccaccttcttatgtcccaatcagaactcctgcaagaaagcttcttgccaccccaact
cctcttggaacacctctgtactcgattcctgaagagaacaggggacaacattttgatgtt
ccaaaagaaatgccaggtgggcttccgttcatgaaaccagaagattatcagtattttggc
gctttgttaaacgaagaagacgaagaggaactctctccagatgaacagaaagagcgaaag
atcatgaaacttcttctcaaggtcaaaaatggaactccccctcaaaggaaaaccgctttg
aggcagctcactgataaagcccgtgaacttggtgctggacctttgttcaaccgtattctt
cctttacttatgcagcctactttggaagatcaagagagacatttgcttgtgaaagttatt
gatagagtcctttacaaactcgatgaactcgttcgaccttatgttcacaagattcttgtt
gtgattgaacctttgttgattgatgaagattattacgcgcgtgttgaaggtagagaaatc
atctccaatctcagtaaagcagccggtttagccaccatgattgctgcaatgcgtccggat
atcgacaacatcgatgaatatgtcagaaacacaactgctagagctttcagtgttgttgca
tcagcacttggcatccctgctttgttaccattcttgaaggctgtttgtcagagtaagaag
tcatggcaagcaagacacacgggtatcaagattgttcaacaaatcgccattcttatcggt
tgtgctgttcttccccacttaaggtctctagttgagatcatagaacatggtcttaatgat
gaaaatcagaaagtcagaacaattactgctttgtccttagctgctctagccgaggctgct
gctccctatggtattgaaagctttgactcggttcttaaaccgttatggaagggtatccgg
tcccaccgtggtaaagtcctagctgctttcttgaaggcaattgggtttatcatccctcta
atggatgctatttacgcgagttactacacaaaagaagtgatggtgattttgattcgtgag
ttccagtcaccagatgaagaaatgaaaaagattgtcctaaaagtggtgaaacagtgtgtg
agtacagaaggtgttgaggctgattacattcgtagcgatatcctcccggaattcttccgg
aacttttgggtcagacgaatggcattggacagaagaaactacagacagcttgttgacacg
acagtggaaatcgcaaacaaagttggtgttcccgacattgttggacgaatagttgaagac
ttgaaagatgaaagcgagccttacagacgaatggtgatggagacaattgaaaaagttgta
gcaaatttgggtgcttccgacatcgatccacgattagaagagcttttgattgatgggatt
ttgtatgcttttcaagagcaaacaagcgatgacgcgaatgtaatgcttaacgggtttggt
gcggttgtgaacgcgcttggtcaacgagtcaaaccttatctcccccaaatctgtggtacc
ataaaatggcgtctaaacaacaaaagcgcgaaagtcagacaacaagcagccgatttaatt
tcaagaatcgcagttgtcatgaaacagtgtcaagaagaacaactaatgggacatcttgga
gtcgtgttatatgaatatttaggagaagaataccctgaagttttggggtctatcttgggc
gcgttaaaagcaattgtgaatgttatcggtatgacgaaaatgacccccccgataaaagac
cttttgccacgtttaacccctatcttgaaaaatcgtcatgaaaaggttcaagaaaactgt
atcgatttagtcggacgtatcgctgaccgtggagccgaatttgtccccgcgagagaatgg
atgcggatctgcttcgagcttctggagatgctaaaagcccacaaaaaaggaatccgtaga
gccacagtcaacacattcggctacatcgcaaaagcaatcgggccacaagacgtgttagca
actctactcaacaatctcaaagtccaagagcgacaaaaccgcgtttgcaccactgtagca
atcgcaatcgtggcggaaacatgttcgccatttacggttctccccgcgttgatgaacgag
tatcgcgtcccggaattgaatgttcagaatggtgttttgaaatcgttatcttttcttttt
gaatatatcggtgaaatggggaaggattacatatacgcggtgactccattgcttgaagat
gcgttgatggaccgggatcttgtgcacagacagacggcagcaagtgcggtgaagcacatg
gcgttgggggtagcggggttggggtgtgaggacgcgttggtccatttgttgaattatgtg
tggccgaatatatttgagacgtcccctcatgtgataaatgcggtgatggaggcgatcgag
gggatgagggtggcgttgggggcggcggtggtgttgaattactgtttgcaggggctgttt
catccggccaggaaggtgagggaggtgtattggaagatttacaattcgttgtatattggg
gctcaggatgcacttgtcgcagcttatcctgttttggaggatgaaggggagaatgtttac
agtaggcccgagttgaccatgtttatctga

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