Lactuca sativa (garden lettuce): 111912059
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Entry
111912059 CDS
T05352
Name
(RefSeq) uncharacterized protein LOC111912059
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
lsv
Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lsv03009
]
111912059
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
111912059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
RYDR_ITPR
RACo_linker
Motif
Other DBs
NCBI-GeneID:
111912059
NCBI-ProteinID:
XP_023763581
LinkDB
All DBs
Position
6:89924831..89937338
Genome browser
AA seq
2608 aa
AA seq
DB search
MATQSHAQAVKSLNKGAGRRRFVFKTFSQRIEEIDVDVFRSLDPLKPEPYEGSSFFRDCL
VEWRELNTAEDFISFYEEMLPLVQTLPQIILQKELILSQLLSRLDMKGRLSLEPILRLIA
ALSRDILEDFIPFLPSVADSMVLLLSSGADRESEIIEQVFTSWSCIMMYLQKYLMRDVVH
VLKVTTKMRFYPKDYIQEFMAEAASFLLRNAPIEQLNRGIKKIISEVVSKPLEARKSGAS
ALLFYVMKGFSSKLHSRAEKVIRLLLHSEIIESGDKDSGGSNPVVEVLITVFQRLCEELQ
SSELKLLLQCEKEEIYKSISSGRSLHLTHLLSLFVSTMENDNVHKIIEFEPVLELAKLLI
ETFILLKKDESSELIDKILQLLICILDGLHTGNHVTALTELSTQWAPIFEMRNKSFLSFI
KKLLSKDPSILQSFRTSIISVLTDLISTMEDEAMYMFIKFFEKLQSLKSCLLEEKPREEI
SRLCIFLEEQISCWIGKINDAAHKDPSCVEFSGTNLGQMWGTATCYSYMEDFQANPTLLM
DFVEAIDRLLMVNSETIGELPRRTWETLIGAGLVSYQKLGFSQLPPVDKFLYFAKKYKSS
IHILSAVADFLDSFDASTTLADGKYHPELEKGKTVDAFDIFSENLCHSDKRIRLFTLRIL
CHYESLTSESMMIDDVQSENVLHSLLAIEATSLSIATSRKVILFITKIQMDLSAERIHNA
YIPLVFNAIIGIYHNQFNYLWNPAMECFAVLVSKYNKLVWDLCMKYLEKSVSNIISHQEH
SRDNTESPENPDDLFTSFNAFVGPSFDDLASPTVLSLLIKSLQLVSAVVESKSRQVIPLF
LNFLGYEADDLSSVRSYNLEASKGKSWKGVLEEWLNLLKSLHNPKSFYRSQFLKEVLQYR
LLDENEPELQLKVLDCLLNWKDEYLLPYGQHLRNLVNPKTLRDELTRWSLSRESELVNEK
HRDSLVPLVIRILVPKVRKLKTLASRKAASMHHRKAVIGFLAELDINELPLFFALLIKPL
QTGSSGVDEVDELLWSTPKASANFDSSGVLKHFTMDNIKSLSSKKIYGFLHVTEEILGVF
DESRIKPVLDTLMGSVVRILASCAGSMEGIECVDEEESGAEKQSMTSLAPKHFKDLRSLC
LKIISLVLNKFENHDFSLEFWDIFFSALKPLIDGFKQEGASSDKPSSLFVCFVAMSRSPK
LVSLFHRAKNLVPDIFSILTITTASEAIISCVLRFIENLLNLEIEMESSDTDVKGILLPN
IDTLICSLHHLFTSKTTNRKSLKYPGGRELNIFKLLPDYIKDPSLGKKFVDILLPSLTKK
HHDWDSCLETLRVIQKMVPMLGNEGSSRILKTISPLLIHATTEVRLAICDILDALSESDP
SVLNVAKLLREFNAVSPMELDVLDYDVIIGAYEKINIEFFCNAQADQSLAILSHCVHDMS
SQDLLLRDSAYRLLLMFLDFCEKILNGELETNMGKWSEASIQNIVNYFFLKYMGEAMDKE
TSVKKVWMDLLREMVLKLPNVFNLESYQVLRSEDAEKDFFNNIVHLQKHRRARALSRLSG
AVQSSHLSDVVTNKVLVPLLFNMLLEVKDGKGEHLRNSCIEALSSVSGSMEWKQYYALLN
RCFRELKLKQDKQKLFLRLICAILDHYHFTADEDHHSDIQSCLQENVLPKIQKLLTFDTD
KVNVNISLVALKLLKLLPGNILELQLPTILHRVSNFLKDRLDSVRDEARSALSACLKELG
LEYLQFMVNILRSTLKRGFELHVLGYTLNFILSKSLSGPVSGKLDYCLEEILSVAENDIL
GDVSEEKDVEQIASKMKETRKKKSFETLKLIAQNVTFKTHALKLMSPVTRHLQKQLTPKL
KSKLETMLQHIASGIECNPTVNHKDILIFVYGLIDDGLKGNSNADVSSTKSTRGGPQCSH
LITIFALGILHNRIKKMKLKENEEEVLSLLDPFVGLLCSCLSSKYEDITSTAIRCLSLVV
KIPLPSLHSQADNIKTALFVILHGSVNASSPLAESCMRLLTVLLKSTSITLSSDQMHMLL
QFPLFVDLERNPSFVALSLLKAIVNRKVVAPEIYDLAKQVAELMVTSQVEPVRKKCSQIF
LQFLLDYSLSQKRLQQHLDFLLSNLRYEHSTGREAVLEMLHAIIMKFPPQVVNEQSQTLF
LQLVVCLVNDSEKKVRLMTGAAIKLLIGRVTPQSLHSILEYTLSWYSGEKQGLWSAAAQV
LGLLVEVMKKGFVKHIDVIFPVMRHIFPSAVNILKSDDNHQDPSTVPLWKEAYYSLVLFE
KILVQFPELCLGKDLEDIWEIICELLLHPHIWLRNISNRLIAFYFTTLTEANRKNNEKWI
GDFFLMRPSRLFLLSVSFCSQLKASLTDDSANNYLRHNIVFAILGLHSILGQQKEAQVFW
STLQQKDEEILIKAFMILDPRKGRSMFASIASGLDGCSDVEKCELLCYLLISSLLKKMGK
IALDMEEIQMRIVFDSFRQISPKILKNMEILEQSDKKDGGTYAYQVLLPLYKICEGFAGK
VISDEVKQFAQEVRDSIRDAIGVQNFVQVYSMARKNLKAKRDKRRQSEKVMAVVNPMRNA
KRKLRIAAKHKENKKRKIMTMKFGRWTQ
NT seq
7827 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacagtcacatgcccaggctgttaagtctttgaacaagggagctggaagaaga
cgctttgtgttcaagacattctctcaacgaattgaagaaattgatgttgatgtttttcga
agtcttgatcccctcaagccagaaccatatgaaggctcatcttttttccgcgattgcctt
gttgaatggagggaacttaacacggctgaggattttatatcgttttatgaggaaatgctt
cctttggtacaaacattaccacaaatcatcttacaaaaggagcttatactctcacaactt
ctttctagattggatatgaaagggagattatctctagaacctatcctcaggttaattgca
gcgttatcacgagatatcttggaggactttataccctttcttccaagtgttgcagattcc
atggttttgcttctcagtagtggtgctgatagggaatcagaaataattgagcaggttttt
acatcctggtcatgcattatgatgtatctacagaaatatttaatgagagatgttgtccat
gtcctcaaagttacaactaaaatgaggttctatccgaaagattacattcaggaatttatg
gccgaagctgcatcttttttgttgaggaatgcacctattgagcagcttaacagaggtatc
aagaagatcatctcagaagtggtgtcaaaaccattggaagctagaaagtctggagccagt
gcattgttgttttatgtcatgaaaggattttcatcaaagttgcattccagagctgaaaaa
gtgattcggttattgcttcacagtgaaattattgaaagtggtgacaaagactcgggaggg
tcgaatccagttgttgaagttttgatcacagtctttcaacggttatgtgaagagctgcaa
tcttcagagttgaaattgttgttgcaatgtgaaaaagaggaaatatataaatctatttct
agtggacgctctcttcatttaactcatcttttgtccttgtttgtttccactatggaaaat
gataatgtgcacaagataatagaattcgaaccagtgcttgagctagctaaattacttatc
gagacttttatcttgctaaagaaagatgaatcctctgaattaatcgacaaaattctgcag
cttttgatttgcattcttgatggtcttcatactggtaatcatgtcacagctcttactgaa
ttgtccacacaatgggctcctatatttgagatgagaaataagagttttttaagctttatt
aagaagcttttatcaaaagacccctccatactccagagtttcagaactagtatcataagt
gtgttgactgatttaatttcgaccatggaggatgaagctatgtacatgtttatcaagttc
tttgagaaactacaatcattaaaaagttgtctattggaagagaaacccagagaggaaatt
tcaagactttgtatttttctcgaggaacaaattagttgctggattgggaagattaatgat
gctgcacataaagatccatcttgtgtggagtttagtgggacaaatttaggtcaaatgtgg
ggaactgcaacatgttattcttacatggaagatttccaagctaatcccactttacttatg
gactttgtagaagccattgaccgacttctgatggtcaactctgagacaattggggaattg
cctagaaggacctgggaaacattaattggagctggcttagtttcttatcagaaattgggc
ttcagtcaactaccaccagtggataaattcttgtattttgctaaaaaatacaaatcttca
atccatatattgtctgctgttgctgacttcttggattcatttgatgcgtccaccactcta
gcagatggaaagtatcacccagagttagagaagggcaaaactgtcgatgcgtttgatata
ttttctgaaaatttatgtcactctgacaaacgaatccgtcttttcaccctaagaatctta
tgccactatgaatctctgacttctgagagtatgatgattgatgatgttcagagtgaaaac
gttcttcattcattgcttgcgattgaagcaacttctctttctatagctactagtaggaaa
gttattctatttataacaaagatacaaatggatctctctgctgaaaggatacacaatgct
tatataccccttgttttcaatgctattattggcatataccacaaccagttcaattatcta
tggaatccagctatggaatgctttgctgttttagttagcaagtataataagctggtgtgg
gatttatgcatgaagtatctagaaaaatcagtgtctaacatcatatcacatcaagaacat
tctagagacaacactgaatcacctgaaaatcctgatgatctgtttacttctttcaatgca
tttgtgggtccttcttttgatgacctggcatccccaactgttttgtcattgttgatcaag
tcgttacaattagtatcagctgttgtggaatcaaagtcacgtcaagttatacctttgttc
ttaaattttttgggctatgaggctgatgatctgtcaagtgtgagatcgtataatttggaa
gcttctaaaggaaaaagttggaagggtgttcttgaagaatggttaaacttgctaaaatca
ttgcacaatccaaagtctttctataggagccaatttctcaaggaggttttacaatatagg
ttgctagatgagaatgaacctgaattgcagttgaaggttcttgattgtctattgaattgg
aaagacgaatatctactcccatatggtcaacatctgagaaatctggtcaaccccaagact
ctgagagacgaactcacaagatggagtttatctagggaatcagagttagttaatgaaaaa
cacagagattctcttgtgccacttgtcattcgtattcttgtcccaaaagtgagaaagtta
aaaacacttgcttctagaaaggctgcaagcatgcaccacaggaaagcagttattgggttt
ctagctgagcttgacatcaacgagcttcctctattttttgctttgttaataaagccttta
caaacgggttcatcgggtgttgatgaggtggatgagttgctttggagtacaccaaaagct
tctgctaattttgattcttcgggtgttttgaaacattttacaatggataacatcaagtca
ctatcttcaaagaaaatatacgggtttctacatgtgactgaagaaattcttggagttttt
gatgagtcacgtataaaacctgttcttgatacattaatgggaagtgttgttcgcatatta
gccagctgtgcaggaagtatggaggggattgagtgtgtagatgaggaggaaagtggagca
gaaaagcaatccatgacgagtttggcacctaaacacttcaaagatttaagatctttatgc
ctaaaaatcatatctttggtgctgaataaattcgagaaccatgatttcagtttggaattc
tgggacatctttttttcagctttaaaacctttaattgatggtttcaagcaagaaggagcc
agcagtgataagccaagttcactctttgtttgttttgttgctatgagtagaagcccaaaa
ctcgtgtcactttttcacagagcaaagaatcttgtccctgatatattctcaattctaaca
atcacaacagcttcagaagccattatatcatgtgttcttagattcattgagaatcttctt
aatcttgagattgaaatggaaagtagtgatactgatgtgaaaggaattcttcttcctaac
atcgatacacttatctgcagcttgcatcaccttttcacatccaaaactaccaacagaaaa
tctttaaaatatcctgggggaagagagcttaacattttcaagctactgcctgattatatc
aaagatccttcacttgggaaaaaatttgttgatattttgcttccatctttgaccaagaaa
catcatgactgggattcatgtctggagactttgcgtgtcattcagaaaatggtaccgatg
ttgggaaatgaaggcagttcaagaatcttgaaaactatttctccacttcttattcatgct
acaacagaggttcggttggctatttgtgatatccttgatgccctttctgaaagtgaccct
tctgtactcaatgtggcaaaacttcttagggaattcaatgctgtatctcccatggagcta
gatgttcttgattatgatgtcataattggtgcttatgagaaaatcaacattgaattcttc
tgcaatgctcaagcagatcaatcactagctatcttgtcacattgtgtacatgacatgtca
tctcaagacttgcttttgagagacagtgcatataggcttttgcttatgtttcttgatttc
tgtgaaaagatcctcaatggtgagttggaaactaacatggggaagtggtctgaagcatcc
attcagaacattgtgaattacttctttttgaagtacatgggggaagccatggacaaagaa
acttctgttaaaaaggtgtggatggatttactacgagaaatggtgttgaagcttcctaat
gtgtttaacctagaatcatatcaagttcttcgtagtgaagatgcagaaaaggacttcttt
aacaatattgtccacttacagaaacataggagggcaagggcgttatcgcgattaagtggg
gctgttcaatctagccatttatcagatgtagttacaaacaaagttctagtccctctctta
ttcaatatgttacttgaagtaaaagatggaaaaggagaacatcttagaaactcttgcatt
gaagctctttcatctgtttctggctccatggaatggaaacaatactatgcacttttgaac
agatgctttcgggagcttaaactgaaacaagacaaacagaagcttttcttaagacttatt
tgtgctattctagatcactatcattttacagctgatgaagatcatcattctgatatacaa
agctgtcttcaagaaaacgttcttcccaaaatacagaagctgttgacttttgatactgat
aaagtcaatgtcaatataagtcttgtggcactcaagctgttgaaactacttcctggaaat
atattggagcttcaacttccaactatactccaccgtgtttcgaattttttaaaagatcgt
ttagatagtgttcgtgatgaagcaagatctgctctttctgcttgtttgaaggaattaggg
ttagaatatcttcagttcatggtcaacatcttgaggtcaaccttaaaaagaggatttgag
cttcatgttcttggatatacactcaacttcatactctcaaaaagcttatcgggtcccgtt
tccgggaaattggattattgtttagaggagattctttctgttgctgaaaatgacattctt
ggtgatgtttctgaagagaaagacgttgaacagattgcttcgaaaatgaaggagacaaga
aaaaagaagtcatttgaaaccctaaagctgattgctcaaaatgtcacgttcaaaacccat
gccttgaagctgatgtcacctgtgacacgtcatctacagaaacagttgaccccaaaatta
aagtcaaaattggaaaccatgttgcaacatatagcttcaggcattgaatgtaacccaact
gtaaaccacaaagacattcttatattcgtttatggcctcattgacgatggtttgaaggga
aattcaaatgctgatgtcagcagtacaaaaagtacacgtggtggcccacaatgttcccat
ctcattacaatctttgctcttggtattctccataatcgaatcaagaaaatgaaacttaaa
gaaaacgaagaggaagtgttgtcattgttagacccttttgttggattgttatgcagttgc
ttaagctcaaagtatgaagatattacatctacagctattcgatgtctttcacttgtagtc
aaaatccctcttccatctcttcattcacaagcagataatataaaaactgcactttttgtg
atccttcatggctctgtgaatgcaagcagcccattggctgaatcttgcatgaggcttttg
actgtgcttttgaaaagcacaagtatcacactttcttctgaccaaatgcatatgctgctt
cagtttccactctttgttgatcttgaaagaaacccttcttttgttgcactttctttatta
aaggcgattgtgaatagaaaagttgtggctcctgagatatatgatcttgctaaacaagtt
gcagagttaatggtgacaagtcaagtggaaccagttcgcaagaaatgcagtcaaatcttt
ttacagtttttgctcgattattctctttcacagaaacgtttgcaacagcatcttgacttc
ttgctttcaaatctaaggtatgagcattcgactggaagagaagctgtgcttgaaatgctt
catgctattatcatgaagtttccaccacaagttgtgaatgagcaatcacagactttattt
cttcaactggttgtttgtttagtgaatgattctgagaaaaaagtcaggttgatgactgga
gctgctataaagcttttgattggtcgagtcactccacaaagtcttcattctattttggag
tacactttgtcttggtattcaggagagaaacagggtttatggagtgctgcagcacaggtg
ttgggattattggtggaagtaatgaagaaagggtttgtgaaacatattgatgttattttt
ccagtaatgagacacatatttccatcagctgtaaacatcttgaaaagtgatgataatcat
caagatccttctacagttcccctatggaaagaagcttactattctctcgttttgtttgag
aagattctagttcaatttccagagttatgcttagggaaagatcttgaggatatatgggaa
ataatctgtgagttgttgctgcatccacacatttggctaagaaacatctcaaatcggcta
atagcattctacttcacaacactaacagaggccaatagaaaaaataatgaaaaatggatt
ggagattttttcttaatgagaccgagtcgactctttctactttctgtctctttctgctct
caactaaaagcatcactcactgatgactcagccaacaactatctcagacacaatattgtt
tttgcaattcttggattgcattcgattttgggtcaacaaaaggaggctcaagtattttgg
tcaactcttcaacagaaggatgaagagattcttataaaagcttttatgattcttgatcca
agaaaagggaggagtatgtttgcatctattgcttctggtcttgatggttgtagtgatgtg
gagaagtgtgagcttctttgctatttgcttatctcctctttgcttaaaaagatgggaaaa
attgcacttgatatggaggaaattcagatgagaatcgtctttgatagttttagacaaata
tcaccaaaaatcctcaagaacatggaaattctagaacaatctgacaagaaagatggtggc
acttatgcttatcaagtgctgcttcctttatacaaaatctgcgaaggatttgctgggaag
gttatttcggatgaagtgaagcagtttgcacaagaggtgagagatagcataagggatgca
attggtgtgcagaattttgtacaagtgtacagcatggcaaggaagaatttgaaggcgaaa
agggataagagaagacaaagtgaaaaagtcatggctgttgttaaccctatgaggaatgcc
aagaggaagcttagaattgcagccaaacataaagagaacaagaagaggaaaataatgaca
atgaagtttggaagatggacgcagtaa
DBGET
integrated database retrieval system
