Lactuca sativa (garden lettuce): 111912166
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Entry
111912166 CDS
T05352
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111912166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111912166
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111912166
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111912166
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
111912166
NCBI-ProteinID:
XP_023763664
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Position
2:complement(133644274..133645382)
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AA seq
280 aa
AA seq
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MSLKDLPPSPPPRIVVRSVFAYNLQSEFHLITSIIDDYPFVSMDTEFPGVVVRPNAGYDY
FRNQSPSDHYLLLKSNVDALKLIQVGLTLTDAEGNLPDLDESNNNTRYIWEFNFNDFDPS
RDQHASDSIELLKRQGIDFEKNREFGIDSVKFSELMMSSGLVCNERVSWVTFHSAYDFGY
LVKLLAGRVLPDELSRFLDLLKTFFGANVYDVKHLMRYCESLYGGLDRVAKTLEVDRAVG
KCHQAGSDSLLTWHAFQKIKVLCSGGPEKYAGVLYGLEVF
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttaaaggacttgccaccatcgcccccgccacgcatcgtcgttcgttccgtcttt
gcgtacaatctacaatcagaattccatttgatcacatcaataatcgatgattaccctttt
gtttcaatggacacggagtttcccggcgttgtcgtacgccctaacgcgggttatgattac
tttcgcaaccagagcccttccgatcactatcttctcctcaaatcgaatgtcgatgctctg
aaactcatccaggttggcctcaccctcaccgacgctgaaggaaatctcccggatctcgat
gagagtaacaacaacactcgttacatttgggaatttaatttcaacgacttcgatccgtca
cgcgaccagcacgcttctgactcgatcgaacttttgaagcgacaagggattgatttcgag
aagaatcgtgaatttgggattgactcggtgaaattctcggagttgatgatgtcttcaggg
cttgtctgtaacgagcgtgtgagctgggtgacttttcacagcgcttatgattttgggtac
ttggttaagctcctggctgggcgggttttgcccgatgagttgtctaggtttctcgatctt
ctgaaaactttctttggggctaatgtttacgatgttaagcatctgatgaggtactgtgag
agtctgtatggtgggttggatcgggtggctaagactttggaggtcgatcgggctgttggg
aagtgtcaccaggcaggttccgatagcttgctgacttggcacgcgtttcagaagattaag
gttctttgcagcggcggacctgagaagtacgccggcgttctctatggattagaagttttc
tga
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