Lactuca sativa (garden lettuce): 111912444
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Entry
111912444 CDS
T05352
Name
(RefSeq) protein CHROMATIN REMODELING 35 isoform X2
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
111912444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111912444
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
111912444
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
111912444
NCBI-ProteinID:
XP_023763947
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Position
5:269671807..269676744
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AA seq
955 aa
AA seq
DB search
MSAILSMEVDDGTETHHRGVCTPSVKGRQTMDSNGEIISPSPRYKHVYMSDKTKSKRKNF
DHTDPFAIRDFVLGFDSPKYGSVTKDIEDLFSRKKQMFMPTFRKFPLLGVDSLDLKPGKD
ISIAIENTKHDTNAQAQQLVVIIDSDDDDEPTSQIPSKSFQDAVLKFPSKPLEDTKLMIL
SKPHEDIELKIPSKAYNDTLLNEPTEQPMEQLLGGDDALDQATKEGGDRDTLTVVVPSVE
KEKSFKDDDMDSEKKHDDVDNDKKHDDVDSGGKKHDKGKYVGVEDDDSDEQPEADFDGLG
DIWKEMTIGLESSKDRIPASHENANEEGKDCDHTFILKEDIGSVCRVCGIIDRRIESIIE
FQRPKTIKSTRTYHYESQTKRGDRANPVLDGVKLPGNDFSVCEVIAHPRHKKQMKPHQIE
GFNFLLSNLVCDNPGGCILAHAPGSGKTFMLISFIQSFMAKYPDARPLVILPRGILGTWK
KEFTRWQVEDLPLFDLYSVKAEGRVQQFEVLKQWANQRSILFLGYQQFSSIVCDDDTSSI
TVSCQEILLTYPSLLILDEGHTPRNQDTNILTSLEKIQTPRKVVLSGTLYQNHVREVFNI
LNLVRPKFLRMENSKAIKRRILSRVPIESRRNLLKKSTDNEFYEVVEHTLLKDEDFKRKV
TVIEDLRDMTNKVLHYYKGDSLDELPGLVDFSVFLNLSPKQQRHVTELKKLKKKFKISSD
GSAIYVHPALKSVLKTTKDKNDDDISKIDEILEKLDEREGVKAKFYLNLLRLCESEGEKL
LVFGQYLLPLKFLLRLTVKTKGWSLGKEVFMITGDHDNDEREIAMDQFNNSPDSRVFFGS
IKACGEGISLVGASRIIILDIHLNPSVTRQAIGRAFRPGQIRKVYTYRLIAADSPEADDH
ETCFKKESIAKMWFEWNEYCGHHDFEMETTSVEDCGDPFLETSWLNEDVTAIYKR
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcaatattgtcaatggaggtagatgacgggacagaaacgcatcatcggggagtc
tgtacgccttctgtcaaagggcgacagactatggacagcaatggagaaattatatcaccg
agtcctagatataaacatgtatacatgtctgataaaactaaaagcaagcgtaagaacttt
gatcacacagatccgtttgccatcagagattttgtgctaggatttgatagtcctaagtat
ggttctgttacaaaagatatagaagatcttttttcacgaaagaagcagatgttcatgcct
acttttagaaagtttcctttacttggagttgattcactggatctgaagcctgggaaggat
atttccattgcaattgaaaacacaaagcatgatacaaatgcacaagcacaacaattggtt
gttatcattgactcggatgatgacgatgaacccacatctcaaatcccttcaaaatcattc
caagatgcggttctcaagtttccttcaaaaccattagaggataccaaactcatgattctt
tcaaaaccacacgaggatatagaactcaagattccttcaaaagcatacaatgatacacta
ctcaatgagcctactgagcagccaatggaacaacttttgggtggagatgatgctcttgac
caagccacaaaggaagggggagatagagatacattaactgttgtggtgcctagtgtcgaa
aaagaaaaaagctttaaagatgatgacatggatagtgaaaaaaaacatgatgatgtggac
aatgacaagaagcatgatgacgtggacagtggaggaaagaagcatgataagggtaagtat
gttggtgttgaagatgacgattcagacgaacaacctgaagctgattttgatggactaggc
gatatatggaaagaaatgacaatcggattagagtcttcaaaggatagaatcccagcatct
catgaaaatgcaaatgaagagggaaaagactgtgatcatacatttattttgaaagaagat
attggttctgtatgtcgtgtgtgtggaataatcgacagaagaatcgaatccataatcgaa
ttccagcgtcctaaaaccataaagagtacacgaacttatcactatgaaagccaaacaaaa
agaggagatcgagctaatcctgttcttgatggagttaagctacccggaaatgatttctca
gtgtgtgaagtaatagctcatccaagacacaaaaagcaaatgaaaccgcatcaaattgag
ggtttcaattttcttttaagcaacttggtgtgtgacaaccctggaggatgcattcttgca
catgctccaggatcagggaaaacattcatgcttatcagctttattcaaagctttatggct
aagtatcctgatgctcgaccacttgtgattctcccaaggggtattttgggaacatggaaa
aaagaatttactagatggcaagtggaggacctcccgttgtttgacttgtactctgtaaaa
gctgagggtagggtacagcaatttgaagtgttaaaacaatgggctaatcagagaagtatt
ctatttcttggataccaacagttttcctcgatagtatgcgatgatgacacaagctcaatt
acagttagctgtcaagagattttactaacatacccttcgcttctcatattagacgaaggt
cacacccctagaaaccaagacactaacattctcacttctcttgaaaaaatccaaacccct
aggaaggtggttctttccggaaccttgtatcagaaccatgtcagagaggttttcaacatc
cttaacctcgtacgtcccaagtttctacgaatggaaaattccaaagctataaaacgacgt
attctgagcagggtgcccattgaaagccggagaaaccttttgaaaaagagtacagataac
gaattctacgaggtggttgaacatactttgttaaaagacgaggattttaagaggaaggtg
actgtgattgaagatttacgtgatatgacgaacaaagttttacactattacaaaggcgat
tccttagacgaattgcctggactcgttgacttttctgtttttcttaacctcagccccaaa
caacaacgccatgtgacagagttgaaaaagttgaaaaagaaattcaaaataagttcagac
ggaagcgcgatttacgtccaccctgcgctcaaatctgtattgaagaccaccaaggacaaa
aacgacgacgacattagtaaaatcgatgagattttggagaaattggacgaaagagaagga
gtaaaagctaaattctatctcaacttactccgtttatgtgaatccgaaggcgaaaagctt
cttgtattcggtcaatatctgttacctttaaagtttctacttcgattaacagtgaagacg
aaaggttggagtctgggaaaagaggttttcatgatcacaggagaccatgacaacgacgaa
cgtgagatagcgatggatcaattcaacaactccccggattccagagtgtttttcggatca
attaaagcgtgtggggaggggatatcacttgtgggggcgtctaggataattattttagac
attcatctgaatccgtctgttacgcgacaagcgattgggcgtgcgtttagaccggggcaa
ataaggaaagtgtacacttaccgattgattgcagcggattcacctgaagctgatgatcat
gaaacctgtttcaaaaaggaatcgattgctaaaatgtggtttgaatggaacgagtattgt
gggcatcatgactttgagatggaaacaacgagtgttgaagattgtggggatccgtttttg
gaaacttcgtggttgaatgaggacgtgacagctatctataaaagatga
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