Lactuca sativa (garden lettuce): 111912842
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Entry
111912842 CDS
T05352
Name
(RefSeq) transcription initiation factor TFIID subunit 15b
KO
K13098
RNA-binding protein FUS
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03015
mRNA surveillance pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111912842
09122 Translation
03015 mRNA surveillance pathway
111912842
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111912842
Spliceosome [BR:
lsv03041
]
Complex A
Other components
Complex A specific factors
111912842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
111912842
NCBI-ProteinID:
XP_023764334
LinkDB
All DBs
Position
5:347388831..347392330
Genome browser
AA seq
503 aa
AA seq
DB search
MSGYGHEGDGSAPPPVGGGYGGSSGGYGGSGGGYGGSGGGGGGYGGRGGGGGYGSSGGGG
SYGSSGGGGGSYGGNRGGGGGYGGGGRGGSGGGGGGGGGGYGSRGGSGGREGGGGGGYGG
NSQNRGGGGYQGGDRGRGGGGGRGGGRGSGREGDWPCPKPGCGNSNFSWRAECNKCGTPS
PAGTGGGGDRGRNDGGSYNKGGGGRSDSRGGSGGGYGGDRGGRGDYDGGSGGGSRGGGGS
YGGSQGRDSGGYGQGAAAGYGGSDSSYPQPPSSYGANTGYGTDAVPPPASYNGGPTSYPP
SYGGGGGGYGGDSGGGRGGSGGGYGGAPQSQGGYGGGSPATDAPAKVKQCDETCDESCDN
ARIYISNLPPNVTVDELRELFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEKGNNKGDAAL
VYEDPSAAHSAGGFYNNFELRGYKISVGMAEKSAPRAPPAHGGGGGGGRGGGGGYGGGGG
RRDNYRDGGPDRNSHGGNRSRPY
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgtccgggtacggtcacgaaggagacggatctgctccaccgcccgttggtggaggctac
ggtggaagtagcggtggctacggaggtagtggtggaggttacggaggtagcggtggcggt
ggaggcggatatggaggcaggggcgggggaggtggttacggaagcagtggtggtggaggc
agttacggaagcagtggtggtggaggtggatcctatggcggaaaccgtggcggaggtgga
ggatatggaggcggcggccgtggtggaagtggaggcggaggtggaggcggaggcggaggg
tatggcagtcgaggtggaagtggtggcagagaaggaggtggtggtggaggatacggtggt
aactcacaaaatcgtggtggaggtggatatcaaggcggagatcgtgggcgtggaggcgga
ggtggtagaggtggtggacgtggcagtggtagagaaggagactggccttgccctaaaccg
ggctgtggcaattcgaatttttcttggagagccgagtgtaacaaatgtgggaccccctct
cctgctggcacgggtggtggtggtgatcgtgggcgtaatgatggtggcagttacaataaa
ggtggcggtggacgcagtgacagcagaggtgggagtggtggtggatatggtggtgataga
ggaggtaggggcgactatgatggtgggagtggtggcggaagtagaggaggcggtggttcc
tatggcggcagtcaaggaagagacagcggtggttatggtcagggggcggcagcagggtat
ggcggatctgacagtagttaccctcaaccaccttcctcatatggggctaacactggttat
ggaaccgatgctgtccctccacctgcaagctataatggtggaccaacttcatatccacct
tcttatggtggtggtggaggcggttatggtggagattctggtggtggccgtggtggctca
ggtggtggatatggcggtgctccacagagtcaaggcggttatggtggtggttctcctgct
actgatgcacctgcgaaggtgaagcagtgtgatgaaacttgtgatgagtcgtgtgacaat
gcaagaatttatatctcaaatttgcctccaaatgtgactgttgatgaattgagagaactc
tttggaggcattggacaagttgggagaattaagcagaagcgaggatataaggatcagtgg
ccttataacattaagatctacactgatgagaaaggaaacaacaaaggagatgctgctttg
gtttatgaggatccttctgcagcacattctgctgggggattctacaacaattttgaattg
agaggttacaaaattagtgtgggaatggctgagaaatcagctccaagggctcctcctgct
catggtggtggtggtggtggtggaagaggaggtggcggaggctatggtggtggtggtgga
cgcagggacaactacagagatggtggtccggataggaactctcatggtgggaatcggtct
aggccatactga
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