Lactuca sativa (garden lettuce): 111912897
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Entry
111912897 CDS
T05352
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111912897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111912897
03036 Chromosome and associated proteins [BR:
lsv03036
]
111912897
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111912897
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
111912897
mRNA degradation factors
5'-3' decay
Decapping complex
111912897
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Gene silencing
piRNA pathway
111912897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NA-iREase2
CMS1
Motif
Other DBs
NCBI-GeneID:
111912897
NCBI-ProteinID:
XP_023764404
LinkDB
All DBs
Position
7:6106584..6111689
Genome browser
AA seq
490 aa
AA seq
DB search
MNNNYARGGGGRYPPGIGRGGGGNYHGNPNPNFQQQYAQRNPAHHQQFQQQQQQQQQQQW
LRRNPVGNDSSVVDEVEKTIQSEAADPSGQDWKAQLRLPPADTRYRTEDVTATKGNEFED
YFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQ
ESNVIQVVILVPTRELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVG
TPGRILDLSKKGICVLKDCAMLVMDEADKLLSPEFQPSVEQLIHFMPTNRQILMFSATFP
VTVKDFKDRYLPKSYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFC
NSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQ
AVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIP
PFIDQAIYCR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaataacaactacgcacgaggaggtgggggaaggtatccgccgggaattgggcgtggt
ggtggtgggaattatcatggaaaccctaatcctaatttccagcaacagtatgctcaaagg
aatccagcgcaccaccagcagtttcaacagcagcagcagcagcagcaacaacaacaatgg
ctgagaagaaaccctgtgggaaatgattcgagtgtggttgacgaagtggaaaagactata
cagtccgaagctgctgaccctagtggtcaagattggaaggcacaattgaggcttccacca
gctgacactcgatacagaacagaagatgtgacagcgaccaaaggaaatgaatttgaagat
tactttctcaagcgtgagttgcttatggggatatatgagaagggttttgaaaggccatct
ccaattcaagaagaaagcatcccaattgccctcacaggaagtgatattcttgcaagagct
aaaaatggaacagggaaaactgctgccttctgcattcctgctttagaaaaaattgatcaa
gagagcaatgttattcaagtggttatacttgttccaactagagaattggctcttcaaaca
tctcaagtctgcaaagaacttggaaaacacctaaacattcaggtcatggttactactggt
ggaaccagcttaaaagatgacatcatgcgattgtatcagcctgttcatttacttgttggt
actcctggaagaatattagatctttcaaagaagggaatctgcgtgttgaaagattgtgca
atgcttgtcatggatgaggctgataagcttttgtcacctgagttccagccttcagtagag
caactaatccacttcatgcctacaaaccgtcaaattttaatgttttcagcaacttttcct
gtgacagtgaaggatttcaaagatagataccttccaaaatcttatgttatcaacctcatg
gacgaacttaccctcaagggaataacacagttctatgcttttgttgaagaaaggcagaaa
gttcattgcctcaatactcttttctcaaagcttcaaatcaaccaatcaataattttctgc
aactcggtaaatcgggttgaactactggcgaagaaaataactgagcttggttactcttgt
ttctacattcatgcaaagatgcttcaagatcatcgtaatcgagtttttcatgattttcgt
aatggtgcttgcaggaatcttgtctgtactgatttattcacgaggggtattgatattcaa
gcagtaaacgtcgttatcaattttgacttcccgaaaaactcagaaacatatctccacagg
gttggtcgatcaggaaggtttggacaccttgggttagctgtaaacctaatcacatatgaa
gatcgctttaatctgtataggattgaacaagaacttggaactgagataaaacagatccct
ccattcattgatcaagctatttattgtcgctga
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