Lactuca sativa (garden lettuce): 111913170
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Entry
111913170 CDS
T05352
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03013
Nucleocytoplasmic transport
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111913170
03015 mRNA surveillance pathway
111913170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111913170
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111913170
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
111913170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
111913170
NCBI-ProteinID:
XP_023764666
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All DBs
Position
1:63892336..63894805
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AA seq
505 aa
AA seq
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MSDTASSAATAAATASSTTTEASPITKTSVVGRWADEPDDVVEEPEATSTSSATDGIILD
SLAIDESKKVNNFLDDPEDANIQAVTSGETPYTSAVRFEDLNLSPELLKGLYVEMKFERP
SKIQSISLPMILTPPFKNLIAQAHNGSGKTTCFVLGMLSRVDPKLGVPQALCICPTRELA
IQNMEVLLKMGKFTGITSELGLPADKANYMPISKRAPITAQVIIGTPGTINKWIAAKKLG
TSQLKILVFDEADHMLAEGGFKEDSVRIMKEIVRWSPKCQVLLFSATFNENVKAFVSKIV
KDLFKQEYNQLFVKKEELSLDSVKQYKVNLPDELSKILVIKDKIMELGQKVGQTIIFVKT
RKSAGMLHDALSGYGYEVTTIQGALTQEDRDKIVKEFKDGLTQVLISTDVLARGFDQAQV
NLVVNYDLPIRHDHQSEPDHEVYLHRIGRAGRFGRKGAVFNLLCGERDNMIMEKIERHFN
HYVTEVTSWTDDEQFEDALKKAGLM
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacactgcgtccagcgccgctaccgctgccgccaccgcctcctccaccaccacc
gaagcctctccgatcaccaaaacttccgttgtcggaagatgggctgacgagcccgacgac
gtcgtagaggagcccgaagcaacatccacttcctccgccaccgacggaattatactagac
tctctcgccatcgacgagtccaaaaaagttaacaacttccttgatgatcctgaagatgcc
aacattcaagctgttacctccggagaaacaccgtatacatctgccgtgagattcgaggat
ttaaacctttcaccggagttattgaaaggactctacgtggagatgaagtttgagagaccg
agtaagatccaatcaattagcttgccgatgatactaactccacctttcaagaatctaatt
gctcaggcacacaatggttctgggaaaacaacttgtttcgtgctcggtatgttgagtcgc
gttgatccaaagctaggcgttcctcaggcactgtgtatatgcccaaccagagaattggca
atccagaatatggaagtgctactgaagatgggaaagtttactggcataacatcagaatta
ggacttcctgcagataaagctaattacatgccgatctccaaaagagcaccaattacagca
caagtaattatcggcacacctggtacaattaacaaatggattgcagccaagaaactgggt
acttctcaactgaagattcttgtctttgatgaagcagatcatatgcttgcagagggaggt
tttaaagaagattctgtaagaataatgaaggaaatcgtgaggtggagtcctaaatgccag
gtgctattgttttctgctactttcaatgagaatgtgaaggcttttgtatcaaaaattgtt
aaagatcttttcaaacaagagtacaatcaactattcgtgaagaaagaagaactgtcattg
gattcagtgaaacaatataaagtgaatctacctgatgaactttcaaagattttggtaatt
aaagacaaaatcatggagctagggcaaaaagttggacaaacaattatatttgtcaaaaca
agaaaaagtgctggaatgttgcatgatgcactttctggctatggttatgaagtcacaaca
attcaaggtgctcttacacaagaagatagagataaaattgttaaagaattcaaagatgga
ttgactcaagttttgatatcaaccgatgttcttgctcgtgggtttgatcaagcacaggtc
aatttggtggttaattatgatcttcctataagacatgatcatcaatctgaacctgaccat
gaagtgtacttgcatcggattggaagagcagggcgatttgggcgtaaaggagctgtattc
aacttgctatgtggtgaaagggacaacatgatcatggaaaaaattgagagacatttcaac
cattatgttactgaggtgacctcatggacagatgatgaacagtttgaggatgctttgaag
aaagctggtttgatgtaa
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