Lactuca sativa (garden lettuce): 111913198
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Entry
111913198 CDS
T05352
Name
(RefSeq) probable pectate lyase 18 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv00040
Pentose and glucuronate interconversions
lsv01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
111913198
Enzymes [BR:
lsv01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
111913198
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
111913198
NCBI-ProteinID:
XP_023764686
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Position
8:complement(28283114..28285590)
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AA seq
560 aa
AA seq
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MAPTNLFIYLLLTFLTSTFIKTWAHLPHQHPDPEAIVLQLQRKLNASITSRRRLLDTNPL
FTQSKDQTLCQTGNPVDDCWRCDPNWVNNRQHLADCAIGFGQGAMGGKGGRFYIVTDSSD
DPENPPPGTLRHAVIQTEPLWITFAKDMHINLQTELIVSSSKTIDGRGAIVHITGKGCIV
IENVGNIIIHGIYVHDCEPSGNAKIRVSPSDVVGRGKTDGDGLTIKGVRNLWIDHCSFAR
CTDGLVDVTEGSTAVTITNNYFTDHDKVMLLGHSDDYLADAGMQVTVAFNHFGEGLVERM
PRCRHGYFHVVNNDYTEWKLYAIGGSAAPTINSQGNRFVAMANDRREVTKRMNAKGDEWK
GWNWRSEGDLMVNGAFFVPSGAGLEVQYAKASSVPPMSAYLINQLTRHAGVLVGAPSSVG
EVPPSGITPHGGDRPVITPPVVGQPSGENPPPGTLPPYGAGFSPGILPPYGAGCVPGNIQ
GGGSGGGDPGINPGVGYGFIPGSPPPVGVLQGSGPGMIPFCGGPGSRRISGGARSSIPTT
IFLSSLVVLSLFMTMTPVYC
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggctcctactaatctcttcatctacttgcttttaacttttctaacttcaactttcatt
aaaacatgggcacacctccctcatcaacaccctgacccagaagccattgttctgcaactt
caaagaaaactaaacgcttcaataacctcaagaagaagattgctcgatacaaacccatta
ttcactcaatcaaaagatcaaactctttgccaaactggcaacccagtcgacgactgctgg
cgatgtgacccaaactgggtcaacaatcgccagcatctcgccgactgtgctatcggattt
ggtcaaggagcaatgggcggcaaaggaggccgcttttacattgtcaccgattcttccgat
gaccctgaaaacccacctccggggacactccgacatgcggtcatacaaaccgagcctctt
tggatcacatttgcaaaagacatgcacataaatcttcaaaccgagctcattgtcagtagt
tcaaagaccatcgatggacgtggggccattgtccacattaccgggaaagggtgtattgtg
attgagaatgtcgggaatattatcattcatgggatttatgttcacgactgtgagccctcc
gggaatgctaagatacgggtgagtccatcggatgttgtgggccgtgggaaaacggacggt
gatggattgacgatcaagggggtgaggaatttgtggattgaccattgttcttttgccagg
tgtacagacggattagttgatgtcacagaggggtccaccgccgtgactataacaaacaac
tattttacagatcatgataaagtcatgttgttaggtcactcagatgattatctagccgat
gctggaatgcaagtgacagttgcattcaatcatttcggagaagggctagtggagagaatg
ccaagatgccgacatgggtatttccatgttgtgaacaacgattataccgaatggaaattg
tatgccattggtgggagcgctgctcccaccattaacagtcagggcaatcgctttgttgct
atggctaatgatcgcagagaggtgacaaagcgaatgaatgcgaaaggtgacgaatggaag
gggtggaattggaggtcggaaggggatttgatggtaaatggtgcattttttgttccttcg
ggtgcagggctcgaggttcagtatgccaaagcctcgagtgttccaccaatgtcggcctac
cttataaaccaactaactaggcatgctggtgttcttgtaggcgccccgagtagtgtaggt
gaagttcctccgagtgggatcacaccacatggcggtgatcgtccggtgatcactccacct
gttgttggtcaaccaagcggcgagaacccaccgcctggaaccctaccaccttatggtgcc
ggattttctccgggaatcctaccaccttatggtgccggttgtgttcccggcaacatacaa
ggaggtggtagtgggggtggtgatcctggtataaacccaggagttgggtatgggtttata
ccaggatcaccaccacctgttggcgtgctacaaggtagtggtcccgggatgatacctttt
tgtggtggtcccggcagcagaaggatttcaggtggagcacgctcatcaataccaaccacc
atttttttgtcttcactagttgtattatcactgttcatgacaatgactccagtgtattgt
taa
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