KEGG   Lactuca sativa (garden lettuce): 111913355
Entry
111913355         CDS       T05352                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    111913355
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsv03019]
    111913355
   03036 Chromosome and associated proteins [BR:lsv03036]
    111913355
Messenger RNA biogenesis [BR:lsv03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     111913355
Chromosome and associated proteins [BR:lsv03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     111913355
    COMPASS/SET1 complex (yeast)
     111913355
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz WD40 EIF3I Beta-prop_EML_2 WDR55 Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_TEP1_2nd NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_NUP159_NUP214 Beta-prop_WDR75_1st Beta-prop_WDR19_1st Cytochrom_D1 Beta-prop_VPS8 KNTC1_N PQQ_2 Beta-prop_DCAF4 Beta-prop_Nup120_160 Beta-prop_DCAF12 VPS11_N Beta-prop_WDR35_TULP_N Beta-prop_IFT140_2nd BBS2_Mid
Other DBs
NCBI-GeneID: 111913355
NCBI-ProteinID: XP_023764845
LinkDB
Position
2:165426939..165431295
AA seq 332 aa
MAGGQTDGEDKVSLELTEEIIQSMEVGMAFRDYNGRISSMDFHRTSNYLVTASDDESIRL
YDVSNATCLKTINSKKYGVDLVSFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
HDRVVSLSLCARTECFISGSLDRTVLLWDQRADKCQGLLRVKGRPATAYDDQGLVFAVAF
GGSIRMFDSRNYEKGPYEIFSVGGDVSDANVVKFSNDGRLMLLTTKDGRIHVLDSFRGTL
LGTYNVKPVSSDSTLEASFSPEGMFVISGSGDGSVYAWSIRSGKEVASWLSTENNPPVIK
WAPGSLMFVTGSSELSFWIPDLSKLAAYIGRK
NT seq 999 nt   +upstreamnt  +downstreamnt
atggcaggtggacaaacagatggagaagacaaggtatcattggagctcacagaagaaatc
attcagagcatggaagtaggcatggccttccgtgattataatggtagaataagttcaatg
gattttcacaggacatcaaattatttggtgactgctagtgatgatgaatccattcgcctc
tatgatgtatctaatgcaacatgtttaaagacaatcaatagcaaaaaatatggtgttgac
ctagtttccttcacttcacaccccacaactgttatatactcctctaagaatggatgggat
gaatctttacgccttctttccttgcatgacaacaaatatttgcgctactttaaaggtcat
catgacagggttgtatctcttagtttatgtgctcgaacagaatgttttatatctggctct
cttgatagaactgttcttctttgggatcaaagagctgataaatgtcagggacttttacgt
gtgaaaggaagaccagctacagcttatgatgatcaagggcttgtatttgcagttgctttt
ggaggatctataaggatgtttgattctcggaactatgaaaagggtccttatgaaatattc
tctgttggtggagatgtatctgatgcaaatgttgtgaaatttagtaatgatggtagactt
atgcttttgacaactaaagatggccggattcatgtgcttgattcttttcgtggcacactt
ttgggcacgtataatgtaaagcctgtgtcaagtgattccaccttggaggcctcttttagt
cccgagggaatgtttgttatatcaggttcaggtgatggtagtgtctatgcttggagcatt
cggagtggcaaagaagtggctagttggctgagcaccgaaaacaaccccccggtaataaaa
tgggctcctggtagtctaatgtttgttactggttcttctgaattgtcgttttggatcccg
gacttatcaaaattggcagcttatattggaagaaagtag

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