Lactuca sativa (garden lettuce): 111913547
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Entry
111913547 CDS
T05352
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111913547
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lsv03009
]
111913547
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
111913547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
EIF3I
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_VPS8
Beta-prop_EIPR1
PEP5_VPS11_N
NBCH_WD40
Beta-prop_WDR75_2nd
Beta-prop_LRRK2
WD40_like
Beta-prop_SCAP
VID27
B-prop_COPA_B_2nd
Utp12
WDCP
VPS8_N
Motif
Other DBs
NCBI-GeneID:
111913547
NCBI-ProteinID:
XP_023765034
LinkDB
All DBs
Position
1:complement(33043965..33050191)
Genome browser
AA seq
908 aa
AA seq
DB search
MGIFEPFRAIGYITSSVPFSVQRLGTETFVTVSVGKSWQIYNCAKLSLVLVGPQLAKKIR
ALASYRDYTFAAYGNDIGVFKRAHQVATWSRHNAKVNLLLLFGEHVLSVDVEGNVFIWAF
KGTDENPSPVGHILLDNEFTPSCIMHPDTYLNKVIFGSQDGSLQLWNISTKKKLYEFKGW
NSSISCCVSSPALDVIAVGCADGKIHVHNIHYDEEVVAFSQTTRGAVTALSFRTDGQPLL
ASGGSSGVISIWNLEKRRLQSVIRDAHDSSVISLHFFANEPVLMSTSADNSIKMWIFDTS
DGDPRLLKFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVTKR
AKKLKVKQEEIKLKPVIAFDVAEIRERDWSNVVTCHMDTPHAYVWRLQNFVLGEHILTPT
TDIQAPVKACTISSCGNFAILGTAGGWIEKFNLQSGMSRGCYVDMSEKGSCAHDGEVVGV
ACDSTNSLMISAGYNGDVKVWSFKGRELKSRWEIGCKVVKIIYHRSNGLLASVTDDLVIR
MFDVVALKMVRKFEGHTDRITDICFSEDGKWLLSSSMDGTLRIWDVIFARQIDAIHVDVS
ITALSLSPNMDVLATTHVDQNGVYLWVNQAMFSGAPHIDSYGSGKEVVKVKLPSISSGVG
GEEGSKDDGDSDNKPPTFTNSQPPQLLDKQIPDLVTLSMLPKSQWQSLINLDIIKERNKP
IEPPKKPEKAPFFLPSIPSLSGEILFKVTTTTDQTTHEEKGTQADDQFHKVTNLPSSPFV
QYIQSSVETKNFEGLTDYLKSLSPSTLDMELRMLQIIDDDEEQEPEKRPELLILELLLEY
LIHEVSHGNNFEFIQALIRLFLKIHGETMRRHSKLDKLLEAQSGIWQKLDGMFQSARCMV
TFLSNSQF
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggggatatttgaaccttttcgtgcaatcggatacattacaagcagcgttcctttctct
gttcaaagattgggcacagagacctttgtcacagtcagtgttggcaaatcctggcagatt
tacaattgtgctaagctcagtttggttcttgttggtcctcaacttgcaaaaaagattcgg
gctcttgcttcatatcgtgactatacatttgctgcatatggaaatgatattggggtattc
aagcgtgctcatcaggtggctacatggagtagacacaatgctaaagtcaacttgttgctt
ctatttggagaacatgttcttagtgttgatgtagaaggcaatgttttcatatgggccttc
aaaggaactgatgagaatccctctccagttggacatattttgctagataatgaattcact
ccaagttgtattatgcatccagacacttacttaaacaaggtgatttttggaagtcaagat
ggttcacttcaactttggaacatcagcacaaagaaaaaactttatgagtttaaagggtgg
aattcatctatatcctgttgtgtttcttctccagctttagatgtgattgctgttgggtgt
gctgatggaaagattcatgttcacaatattcattatgatgaagaagtggttgcttttagt
caaactactcgaggtgctgtgacagcattgtcattcagaactgatggtcaacctctttta
gcatctggaggttcatctggtgtcataagcatatggaatcttgaaaagaggcggctacaa
tctgttatcagagatgctcatgatagctctgtgatttcattgcatttttttgctaatgaa
ccggtgttaatgagtacatctgcagacaactctataaagatgtggatttttgatacaagt
gatggtgatcctcgtttgttaaagttccgaagtggtcatagtgcgcctcctctttgtata
aggttctatgctaatgggagacacattctatctgctggtcaagatcgtgcatttcgcctc
ttctctgttattcaggatcaacaaagtagagagctttctcagcgtcatgtaacaaaaaga
gcaaagaaacttaaagtgaagcaagaagaaataaaattgaagcctgtgattgcatttgat
gttgctgaaattagggaacgcgattggtcgaatgtggttacttgtcatatggatactcca
catgcatatgtttggaggctacaaaattttgttcttggtgagcatatcctgacacctacc
acagatattcaagctccagtgaaggcttgcactatcagttcatgtgggaattttgctata
ctaggcacagcaggtggctggattgaaaaatttaaccttcaatctggtatgagcagagga
tgttatgtggacatgtctgaaaaaggaagctgtgctcatgatggagaggtggttggtgtt
gcctgtgattcaacaaattctctaatgatcagtgcagggtataatggtgatgtaaaggtt
tggagttttaaaggacgagaactaaaatcaaggtgggaaattggttgcaaagtggttaag
atcatctaccatcgttctaatggtcttttggctagtgttacggatgatttggttatacga
atgtttgatgtggtggcattaaaaatggttcggaagtttgaaggtcacactgataggatc
acagacatttgttttagtgaagatggaaaatggcttttgtcttccagtatggatggcact
cttaggatttgggatgtgatttttgcaaggcagattgatgctatacatgttgatgtatct
ataactgccttgtctttatcaccaaatatggatgttttggctacaactcatgttgatcag
aatggagtctatctctgggtaaaccaggcaatgttttctggggccccacatattgattct
tatggaagtggaaaggaggtggtgaaggttaaattgccttccatctcttcaggagtagga
ggagaagagggttctaaagatgatggtgattcagataataagccacctactttcaccaac
tctcagcctcctcagctgcttgataaacaaattccagatcttgttaccctttcaatgtta
cccaagagccagtggcaaagtttgatcaatttggacatcattaaggaacgcaacaagccg
attgagcctccaaaaaaacctgaaaaggccccattctttttaccttcaataccctccctt
tctggagaaattttgtttaaggtaacaacaacaactgaccagaccacccatgaagaaaag
ggaacacaagctgatgatcagtttcataaagttaccaatctgccctcatcaccctttgta
caatatatccagtcatctgttgagaccaaaaactttgaggggttgacggattatctgaag
agtttatctccttcaacattggatatggaactacggatgcttcagattattgatgatgat
gaagaacaagaacctgaaaagagaccagagctgttaatccttgaactgctacttgagtat
ttaatacatgaagtatcacatgggaacaactttgaattcatacaggctctcatccgattg
ttcttgaagatacatggtgaaacaatgagacgacattccaaattagataagcttctagag
gctcagtctggtatatggcaaaagctagatgggatgtttcagagtgctagatgtatggtt
acttttcttagtaactcacagttttaa
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