KEGG   Lactuca sativa (garden lettuce): 111914116
Entry
111914116         CDS       T05352                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
lsv  Lactuca sativa (garden lettuce)
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:lsv03009]
    111914116
Ribosome biogenesis [BR:lsv03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    111914116
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st EIF3I WDR55 Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd NBCH_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_HPS5 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_DCAF4 Beta-prop_VPS8 WDR90_beta-prop_4th Beta-prop_IP5PC_F Beta-prop_RIG_2nd Beta-prop_WDR75_2nd WDR54 Beta-prop_IFT140_1st Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_WDR19_1st Beta-prop_LRRK2 VPS8_N Beta-prop_SPT8 WD40_RFWD3 Beta-prop_BBS7 Beta-prop_DCAF12 Beta-prop_IFT140_2nd DUF3987
Other DBs
NCBI-GeneID: 111914116
NCBI-ProteinID: XP_023765625
LinkDB
Position
6:complement(200054807..200057315)
AA seq 454 aa
MEDEVVIASSSIEAGIGCWGLRSGAEHLRYRSCASPPHGLVSVAGRFLASSQLRDSSSSS
GSVLFWSWNKPQVEVKSFPAEAINPLACNTDGTYIVGGGVSGHIYLWEVATGRLLKKWHG
HYRPVTCLVFSNDQSLLISGSEDGTVRVWSLLMIFDEEGQQRVGHLYEYSFTGHALPVTD
IVTGYGGSNAIILSSSLDRTCKIWSLARGTLLRNIVFPSIIDAVALDPGEHVFYAGGRDG
KIYIAELNAQTTSNNHNNNNYGLHIIGTLSDQSKAICSLGFALDGYQLVVGSEDGMVRVW
DTKTRNIIRVFKHAKGPVNNIVVMRQPAALYPRTAGNNNNNQGPMARRHVALPPPLEKYS
SIDEHSELNAFITPRSNSYDAPTYTTLQSMNNQINELQQHGSSGASEMELERLKLDCKRS
MQMVQQWKKMYQNLNQFCVGELLNGEADETNLML
NT seq 1365 nt   +upstreamnt  +downstreamnt
atggaagacgaagtagtcatcgcttcttcatccatcgaagccggaatcggttgctggggc
cttcgttccggtgcagaacatctccgctaccgctcatgcgcctctcctcctcacggcctt
gtatccgtcgctggacgcttccttgcttcctcccagctccgtgattcttcatcatcatct
ggttccgttctcttctggtcgtggaacaagcctcaggtagaagttaagagttttccagct
gaagcaatcaatcctcttgcttgcaatactgatggtacttacatagtaggaggaggagtt
tctggtcatatttacttgtgggaggttgcaacaggtagattattgaagaaatggcatggc
cattataggcctgttacttgcttggtcttttctaatgatcaatcacttttgatttctgga
tccgaggatggaactgttcgagtctggtcacttctgatgatctttgatgaggaaggacaa
cagagagtaggacatctgtatgagtacagtttcactggtcatgctttacctgtaacagac
attgttacaggctatggaggatccaatgcaattatcttatcttcttctctagatcgtact
tgcaagatatggagcctagctagagggacattgttgagaaatattgtgttcccttcaata
attgatgcagttgcattagatccaggggaacatgttttttatgctggtgggagagatggg
aaaatatacattgcagaactcaatgctcaaaccacatccaacaatcacaataacaacaac
tatggtttgcatatcattggcacattatctgatcaaagtaaggcgatatgctctttgggt
tttgcattggatggatatcaattggttgttggatcagaggatggaatggttcgtgtttgg
gacactaaaactcgtaatatcattcgtgtttttaaacatgcgaaaggtcctgttaacaat
attgttgttatgcgacaaccagcagcgctttaccctcgaacagcaggaaataataataat
aatcagggtccaatggcaagacgacacgtggcgttaccacctccacttgagaaatactct
tcaatagatgaacactcagagcttaatgcattcatcactcctcgatccaattcgtatgat
gcccccacctacaccactcttcaatctatgaacaaccagattaatgagcttcagcaacat
ggttcttctggagcttctgaaatggaactggaaagactaaaactagactgcaaaagatcc
atgcaaatggtccaacaatggaagaaaatgtatcaaaatttgaatcaattttgtgttggt
gagctcttaaatggagaagccgatgaaaccaacttgatgctctaa

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