Lactuca sativa (garden lettuce): 111914197
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Entry
111914197 CDS
T05352
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111914197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsv03041
]
111914197
03009 Ribosome biogenesis [BR:
lsv03009
]
111914197
Enzymes [BR:
lsv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111914197
Spliceosome [BR:
lsv03041
]
Complex A
U1 snRNP components
U1 related factors
111914197
Complex B
111914197
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
Pre-60S particles
Helicases
111914197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Transformer
Motif
Other DBs
NCBI-GeneID:
111914197
NCBI-ProteinID:
XP_023765733
LinkDB
All DBs
Position
6:complement(205165021..205171898)
Genome browser
AA seq
985 aa
AA seq
DB search
MAAEGASDALGPRYATPDPSLPEPWKGLVDGSSGVLYYWNPETNITQYEKPTALPPPVPP
ASKPASISTAQPNGVPGQGQQPHQLTQNTQQFTPQPDQQGGPAMQQMGHHFRPQMQPQQG
NNMPQSHSQGYPFPHQQMQYGGYQPNMPPQQMQQYPHQQDHRPAFPQRDDGNSQTGAIAP
PGQATQYGGSQFSMQQQPPSFGQHGPNFQNQMGQPLLHGQQPNAPPVGMKMGFEDNPPGR
GGGNDPYFNAKNDVPNQPKLAAIPMARMQPEMNPASHNMYGQAQAMGGPPYMNNPMMRPN
PSVMASPDAMSLSSVDVYRQKHDVTATGDNVPAPFMSFESAGLPPELLREIRAAGFASPT
PIQAQTWPIALQNRDIVAIAKTGSGKTLGYLIPAFMLLKRCHNNPQNGPTVVVLSPTREL
ATQIQDEAIKFGRSIRVSCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMRKVDF
RQVALLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQ
VNIGNADELAANKSITQYVEVVPHMEKQRRVEQILRSEERGSKIIIFCSTKKLCDQLTRS
IGRNFGAAAIHGDKSQQERDWVLNQFRSGKSPILVATDVAARGLDIKDVRVVINYDFPNG
VEDYVHRIGRTGRAGAKGVAYTFFSEQDWKHAPDLIKLLEGANQPVPNEVRDIATRGAPA
FGRDRAAGGGGRWDSGGGGGRGGMRDGGGFRGGRVDSRDGGFGGRGGGGDGRFGGFSGRG
FGGRGGQRDDGFGGRGGFGGRGGGRDGNFGGRGGGGGRGIGFGGADGGWDRNDRFGGRGG
GGRGSGSVSVRGRFDNRRDGDRSSRGRSYSRSPDRVRTWNSRSRSRSRSYSRSRSYSRSR
SRSRSWSRSRSRSRSRSPTPVRRERRRESKFDQKETDLPPGVPPLVPSGSQQQGQEVSGA
GAGAGAEAPQIPSQVDPGLDQIGQG
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgaaggagcctctgatgctctgggacctcgttatgctacacctgatccatct
ttgcccgaaccttggaagggtttagttgatgggagctcaggtgtcttatactactggaat
cctgaaactaacatcacccaatatgagaaacctactgctttgccacctcccgtaccccca
gcatctaaaccagcttctatatccactgcacaaccaaatggtgttcctggtcaaggtcaa
cagccacatcaattaacacagaacacacaacaatttaccccacaaccagaccagcaaggt
ggacctgctatgcagcaaatgggacaccacttcaggcctcaaatgcaacctcaacaagga
aataacatgccccaatcacattcacagggctacccgtttccacatcaacagatgcagtat
ggagggtatcagccaaacatgcctcctcaacagatgcagcagtatcctcaccaacaagac
cacagacctgcattccctcagagagatgatggcaactcacagactggtgctatagctcca
cctggccaggctacacaatatggtggttctcagttcagcatgcaacaacaacctccgtct
ttcggtcaacatggaccaaatttccagaatcaaatgggtcaacctttgttacatggtcag
cagccaaatgctccaccagtaggaatgaaaatggggtttgaagataatccacctggaaga
ggaggtgggaatgatccctattttaatgctaaaaatgatgtccctaatcaacctaagctt
gcagcaattccaatggcaagaatgcagccggagatgaatccagcatcacataacatgtat
ggacaagcacaagctatgggtggtccaccttatatgaataatcctatgatgaggccaaat
ccatcggttatggcctctccagatgcgatgagtctatcatctgttgatgtttaccgacag
aaacatgatgttacagcaacgggtgacaatgttcctgctccattcatgtcatttgagtct
gctggactcccaccggagttgttgagagagatacgtgctgctggttttgcttctccaaca
cctattcaggcacagacatggcctatcgcccttcaaaacagggacatagtggcaattgca
aagacaggttctggtaaaacattggggtacctgattccggcattcatgctgctcaaacgt
tgtcacaacaatcctcagaatggacctactgttgttgttttatctcccacaagggaactt
gctactcaaatacaagatgaagccatcaagtttggccgatccattagggtctcttgcact
tgtctgtatggtggggctccaaagggtccacaactgaaggaattggaacgaggggcagac
attgttgtggctactcctggtcgacttaatgacattcttgaaatgaggaaggttgatttt
cgtcaggttgcacttcttgtgcttgatgaggctgataggatgcttgatatgggttttgaa
cctcaaataagaaagattgtgaatgagatacctcctcgcaggcaaactctcatgtatact
gccacctggccaaaagaagtaagaaaaatagctggtgatcttcttgtcaatcctgttcag
gtcaacattggcaatgcagatgagcttgctgcaaacaagtccattacacagtatgttgaa
gtggttcctcacatggagaagcagaggcgtgtggagcagattctgagatcggaagaacgg
ggatcgaaaattataatattctgttcaacaaagaagctatgtgatcagttgacacgaagt
attggtcgtaattttggggcagcagccattcatggggacaagtctcagcaggagagagat
tgggttctcaatcagtttcgttcaggaaagtctccaattttagttgctacagatgtcgct
gctcgaggccttgacatcaaggacgtaagggtggtgattaattatgattttccgaatggt
gttgaggattatgtccacaggattggaagaacggggagggcaggggcaaaaggggtggcc
tacactttcttctctgaacaggactggaaacacgcacccgatctcataaagcttctagaa
ggtgccaatcagcctgtacccaatgaggtgcgagacattgccacacgtggtgcccctgct
tttggtagagacagggctgctggtggaggtggccgttgggattccggtggtggtggtggc
cgtggcggcatgagggatggcggtggctttaggggcggtcgtgttgactctagagacgga
gggtttggcggacgtggtggtggaggtgatggcagatttggtgggtttagtgggcgtggg
tttggggggagaggtggccagagagatgatgggtttggaggtcgtggtggttttggtggt
cgcggtggagggagggatgggaactttggcgggcgtggtggtggtggtggtaggggaatt
ggatttggtggagcggatggtggttgggacaggaatgatagatttgggggaaggggtggt
ggtgggcgtgggagtgggagtgtgagtgtgaggggccggtttgataacagaagagatggt
gatcgtagcagcaggggaaggagttacagcaggagtcctgatagggtccgaacatggaat
agcagaagccgaagccgaagccggagttacagtcggagtcggagttacagccggagtcgg
agtcggagtcgtagctggtcacgcagccgaagccgaagcaggagccggagtcccacacca
gtgaggcgtgagaggcggcgtgagtcaaagtttgaccagaaagaaaccgacctgcccccc
ggagttcccccccttgtgccttcgggcagccaacaacaaggtcaagaggtatcaggggca
ggggcaggggcaggggcagaggccccccaaataccatcccaagttgatcctggtttggat
cagattggccaagggtaa
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integrated database retrieval system
