Lactuca sativa (garden lettuce): 111914911
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Entry
111914911 CDS
T05352
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111914911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsv03036
]
111914911
Chromosome and associated proteins [BR:
lsv03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
111914911
SWR1 complex
111914911
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
DBINO
Motif
Other DBs
NCBI-GeneID:
111914911
NCBI-ProteinID:
XP_023766382
LinkDB
All DBs
Position
1:complement(69401689..69410837)
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AA seq
1947 aa
AA seq
DB search
MASKGPRSRLDHETRAKRQKALEPPKEPQRPRTHWDHLLEEMVWLSKDFESERKFKLGLA
KRIAIRASKGMVDQATRGERRVKEEELRMKKVALNISKDVKKFWTKIEKLVLYKHRLELD
QKKKKALDKQLEFLLGQTERYSTMLAENLVDSSPHQHVQLSSVQEQRPAIEYKDQSDVNG
CAEPNVESQSNILETDEDYKAENEPEDDEHTLEEDEALITEDERREELTALQNEMDLPLE
ELLRRYTVNEESTPGKTEGEAELAHAPEDNLLCNGNDNSDLGLKESRHCAESNGGLSVLE
NHHPEVKEHYVRKRKGLKKQKKYLELDFNDENEDVDFVLANGEEKDDETTLLEEEELAKT
ENHDSVDELAMLQKDSEIPIEELLARYRQDPDTIQSDENDSGSEIEVPDQEEKPDEIADD
DGENDDIIADAAAAARSAQPTGNTFLTTKVRTKYPFLLKFSLREYQHIGLDWLVTMYEKR
LNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKIL
TYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKIFKRKKWRYLILDEAHLIKNWKS
QRWQTLLNFNTKRRILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFSNPITGMVE
GQEKVNKEVVDRLHNVLRPFILRRLKRDVEKQLPSKHEHVIYCRLSRRQRNLYEDFIASS
ETQATLQSSNFFGMISVIMQLRKVCNHPDLFEGRPIISSFDMNGIETQFCSSVCSVLESS
PFSTVDLTGLGFVFTHLDFDMTSWETEEVESIATPSELIKSRVVEESMSRLEIKTGSTGF
NIFEEIQKALMEERLKEMKARAKSVAWWNSLRARRKPMYSTGLREIVSVENSVSTLTGLH
DIVFSPVDRFNQMADQVESFMFAIPAARAPPPVGWCSKSGTTVFVNQDYKTKCLTLLSPL
LTPIRPAIVRRQVYFPDRRLIQFDCGKLQELAVLLRRLKSEGHRALIFTQMTKMLDVLEA
FINIYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYD
SDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGEYN
TEFFKKLDPLELFSGHGKNSGSGVAIPVPVPVSNADVEAALKHAEDEADYMALKKVEQEE
AVDNQEFTEEAIGKLEDDELLNEEDGKFEELGTGQVEGNNREMVVCSDPNGDPGLTLVKG
DDGDDDDMADDVKQMAVAAAASGQEILSFENQLRPIDRYAVRFLEMWDPIVDNVVIESKD
RFEGEEWELDHIEKLKEDMEAEGDDDEEPLVYETWDTEFATKVYQEQVKALAEHQLMEER
EMEAREKELEESDSLKNEPVVKKPKSKKKTKKTKFKSLKKEALSSETKPINIESPIEFDD
DYVDDEIIFLKKRKKPLDESTSEVKSSSKKSKKPKKTPEPIPLDMDSNSLIEQQDEPRDL
KPCVNNNLEIDHKPVIRGKTGLKISVTTMPVKRVMTIRLEKLKKGSIWPNDCVPTPDSWL
SSEDAMLCAVVHEYGVNWSLASEILNGMTAGGFYRGIVRHPVHCCERYRELVQRHVLSIS
DNNVHNEKASNVGVGKALLRVTEEHAKALLDMVSELPDQAYTLQKHFFHLLTSVWRSTAR
SGHRKTPLSLRTGQRVNHTSRDPVRSQLERMEFTNLRQISRLVSDALESSQNIPREDRVS
SFSERREVRPVGQLGITLEFPPGRDDQSVPLPSVVSLSINDMESVLPENLPVGGNHCFRS
SKDTVECRFRDASRAAIDGGLGLPPSASPATDVKSRTPAKSQLSGKHHRNPELPSKSSKS
KSRKAITDSNEAFSLLRDPNLQPSMPPVNLCSRFDTDTESSMDDFLSASSIDLGNEVSFD
IVPHDYDPGFTWGLEDCLLSREFTDIG
NT seq
5844 nt
NT seq
+upstream
nt +downstream
nt
atggcctctaaaggtccaaggtctagacttgatcatgagacaagggccaaacggcaaaag
gcacttgaaccacccaaggaaccccagaggccccgaacacactgggaccatcttttagaa
gagatggtgtggttatcaaaggattttgagtctgagagaaaatttaaattaggcctggca
aagaggattgccataagggccagcaaaggtatggtggatcaagctacaagaggcgaaaga
cgagtgaaggaggaagagcttcggatgaaaaaagttgcacttaatatttcaaaggatgtg
aagaaattttggacaaaaatcgagaagctggtgctatacaagcatcgattagagcttgat
caaaagaagaaaaaagcacttgataaacaacttgaatttcttctaggccaaacagaaagg
tattcaacaatgctggcagaaaaccttgtagattcgtcgccacatcagcatgtccagctg
tcatctgtacaagaacaacgacctgctattgaatataaagatcagagtgatgttaatggg
tgtgctgaaccaaatgttgagtcccagtcaaatattttagaaactgacgaagactacaag
gctgaaaatgaacctgaagatgacgagcatacccttgaggaagatgaagccctcataaca
gaagatgaaaggcgagaggaattaacagctttgcaaaatgaaatggatttaccccttgag
gaattacttcgtcgttatactgttaatgaagaaagtactccaggaaagactgaaggtgaa
gcagaactagcccatgcaccagaggacaacttactgtgtaatggaaatgacaattctgac
cttggattgaaagagagtcgtcattgtgctgaaagtaatggcggattatcagttttagaa
aatcatcatccagaagtcaaagaacattatgttagaaaacgtaaaggtcttaagaagcaa
aaaaagtatttggaattggacttcaatgatgaaaatgaggatgtcgactttgtacttgca
aatggagaggaaaaggatgatgaaacgaccttattggaggaagaagaactagcaaagact
gaaaatcatgattcagtagatgagcttgcaatgttgcaaaaggatagtgaaattccaata
gaggagttgcttgcaaggtatagacaggatccagacactattcaaagtgatgaaaatgat
tcaggctccgaaattgaagttcccgatcaggaagagaagccagatgagattgctgatgat
gacggggagaacgatgacatcatcgctgacgcagccgctgccgccaggtcagcacagccg
acagggaacacctttttaacaaccaaagtcaggacaaaatacccttttctattaaaattc
tctcttcgtgaataccaacacatcgggttagattggcttgtaacaatgtatgaaaaaaga
cttaatgggattttagcagatgaaatgggacttgggaaaacaatcatgacaatcgcgctt
cttgcacacctggcatgcgaaaagggtatatggggcccacatctgattgtggtccccaca
agtgtcatgctcaattgggaaaccgagtttctaaaatggtgtcctgctttcaaaatcttg
acatattttggaagtgcaaaagaacggaaacataaaagacaagggtggttgaaaccaaat
tcttttcatgtttgcatcacaacctacagactcgttattcaagattccaagattttcaag
agaaaaaaatggagatacttgattttggatgaagcccatttgataaagaactggaagtct
caaagatggcaaacacttttgaatttcaacacaaaaagacgcatacttttaacgggtacc
cctttacagaacgatctcatggagttatggtctctaatgcatttcttgatgccacatata
tttcaatctcatcaagagtttaaagattggtttagtaatccgataacaggaatggttgaa
ggtcaagaaaaagtcaacaaagaagttgttgaccggttgcataatgttctccggccattt
atcctccggcgactgaaacgggatgttgaaaaacaattaccttcaaaacacgaacatgtt
atctactgtagactctcgcgtagacaacgaaatctctatgaagatttcattgccagctca
gagactcaagcaacccttcaaagttctaactttttcgggatgattagtgttataatgcaa
ttaagaaaagtttgtaatcatccggatttattcgaaggtcgcccgattatcagttcattt
gatatgaatggaatcgaaacccaattttgttcttcggtttgctcggttcttgaatccagt
ccgttttcaaccgttgatcttactggattagggtttgtgtttactcatcttgattttgac
atgacatcatgggaaaccgaagaagttgaatcaatcgccacaccttcagaactaatcaaa
tcacgtgtagtagaagaatccatgagtcgactcgagatcaagactgggtcaaccgggttt
aacatctttgaagagattcaaaaagcgctcatggaagagagactcaaagaaatgaaagca
cgggccaaatcggttgcatggtggaattcgttgcgggcccgtagaaaaccaatgtattca
acgggtttacgggaaattgtttcggtggaaaattccgtttctacccttacgggtttacat
gacattgtgttttctccggttgaccggttcaatcaaatggctgaccaggttgaaagtttc
atgtttgcgatccctgctgcccgagcaccaccaccggtcgggtggtgcagcaaatcgggc
accactgtgtttgtcaaccaagattataaaacaaaatgtttgacacttttgtccccacta
ttaacaccgatcagacccgccattgtcaggcggcaagtttactttcccgataggcggtta
atacagtttgattgtggtaaacttcaagagcttgcggttttgttaagaaggttaaaatcg
gaaggtcatcgggctttgattttcactcaaatgacaaaaatgcttgatgttttggaagct
tttataaatatatacgggtacacttacatgcggttagacgggtcgacccagcccgaagag
aggcagacattaatgcaacggttcaatacaaacccgaagtattttcttttcattttgtct
acccggagtggtggggtcgggattaatcttgtcggggccgatacggtaattttctatgat
agtgattggaatccagccatggatcaacaagctcaagatcggtgtcataggattgggcaa
acacgtgaagtgcatatttatagattgatcagtgaaagcacgattgaagagaatattttg
aaaaaggcgaaacagaaacgggctttagatgatttggtgattcagagtggggagtataac
actgagttttttaagaagcttgatcctttggagttgttttccggtcacgggaagaattcc
ggttccggagttgcgattccagttccggttccagtgtcgaatgccgatgttgaggcggcg
ttgaaacatgcggaagatgaagcggattacatggcgttgaagaaagtggagcaggaagag
gctgtggacaaccaggagtttactgaagaagcgattgggaaacttgaagatgatgagctt
ttgaatgaagaagatggaaaatttgaggagttgggaacgggacaggtggagggtaataat
cgggaaatggttgtttgtagtgacccgaatggggacccgggtttgactttggtcaagggt
gatgatggtgatgatgatgacatggcggatgatgtgaaacagatggctgtggcggctgca
gcctcggggcaggagattttgtcttttgagaatcaattgcgtccgattgatcggtatgcg
gttcggtttcttgagatgtgggacccgattgttgataatgtggttattgagtcaaaggat
agatttgagggagaggaatgggagttggatcatattgagaagttaaaggaggatatggaa
gctgaaggtgatgatgacgaggaacctttagtttatgaaacatgggatactgagtttgcg
actaaagtataccaagaacaagtcaaggcgttggctgaacatcagttgatggaagagcgt
gaaatggaagctagagaaaaggaacttgaggaatctgactcactgaagaatgaaccggtt
gttaagaaacccaagtcaaagaaaaagacgaagaaaacaaagttcaaatctctgaaaaaa
gaagctttatcatccgaaacaaagccaataaacatagaatcaccaatagaattcgatgat
gattatgttgacgatgaaataatttttttaaaaaaacgcaaaaaacctttggacgaatcc
acctcagaagtgaagagttcttccaaaaagtcaaaaaagcccaaaaagaccccggaacca
atcccattagacatggattccaattccttaatcgagcaacaagatgaaccgagagatttg
aaaccgtgtgtaaataacaatcttgaaattgatcataaacctgtcatcaggggcaaaacg
ggactaaaaatatcagtcactacgatgccggtgaaacgggtgatgactataagattggag
aagttgaagaagggaagcatatggcctaatgattgtgtccctacgccagattcttggttg
tcatcggaggatgctatgctgtgtgcagttgtacatgaatacggtgtgaactggagtttg
gcaagtgagattttgaatgggatgacagctggcgggttttaccgggggattgtaaggcac
ccagttcattgttgtgagaggtatcgagagcttgttcagagacacgtgttgtctatttct
gacaataatgttcataatgaaaaagccagtaatgttggtgttgggaaagctcttctaaga
gtaactgaggagcatgcaaaggcgttgttggatatggtgtcggaacttcctgatcaagct
tacactcttcaaaagcatttcttccacctactcacatctgtctggagatcaaccgctcgt
tccggtcaccggaaaaccccattgtctctcagaaccgggcagcgggtgaaccatacttct
cgcgatccggtcaggtcacaattggaaagaatggagttcactaacctaaggcagattagc
agattagtatccgatgcacttgaaagttctcaaaatataccaagggaagatagggtttca
agttttagtgaaagacgtgaggttcgacctgtcgggcagctgggaatcactcttgagttt
cctccgggcagagatgatcaaagtgttccgttgccttccgtcgtatctttatccataaat
gacatggaatccgtgctgcccgaaaacctgcccgtgggcgggaatcattgttttagatca
tccaaggataccgttgaatgccgattcagggatgcatcaagagcagccattgatggtggt
ttagggttgccgccatcggcttctccggcaaccgatgtgaagtcccggacaccagctaaa
tctcaattatccggaaagcatcatcggaatcctgaattaccatcgaagtcgtcgaaatcc
aaatcaaggaaagcaatcacggattccaacgaagctttttccctactccgtgatcccaat
ttacaaccatcgatgccacccgttaatttgtgttcaaggtttgatacggatacggaatct
tcaatggatgattttctgagtgcatcttcgatcgatttaggcaatgaagtttcgtttgat
atagtgccccatgattacgacccaggattcacctggggtcttgaagattgtttgttatct
cgggagtttactgatattggatag
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